Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0550 ATGGCAATGAATAATAGAAGATTGGAATTTGGAAGGCCTGCCTCGGGTAAAAGAAGAATGAAGGATTTATTGCTTCATAAAGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTGTGTGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGATTAATTCTGTGACATTGGATGAATGGTCAGAAGAAGAAATTGATGCAATGATTGAAGTTGGAGGAAATGCTTCAGCTAATTCAATTTATGAGGCTTATCTTCCAGAAGGATATACTAAACCTGCATCAGACGCCAGTCACGAGCAGCGTGCAAAGTTCATCAGATCAAAGTATGAGCACCAAGAATTTTTGAAGCCTAGTTTGCGCATCGTGTCAGGAAAAAGCAGCAGCCATAAAAACACTTTTAAAGCAAGTTTTTCCAAAAGGCTTATGGATAGCTTTAGAAAAAGCACTAGTTCTTCAAAGAATATGGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTAAAAGTGATTAAAGGCACAGATTTAGCTATCAGAGACATGATGACAAGCGATCCATATGTCATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTATAATAAAGAGCAACTTGAATCCAGTCTGGAATGAGGAGCTTATGCTGTCTGTTCCTGAAGAATTTGGACAATTGAGTTTGCAAGTATACGATCATGACATGTTTTCGGCGGATGATATAATGGGAGAGGCAGACATTGATCTTCAACCATTGATTACATCTGCCATGGCATTCGGAGATGCTGGAATGTTTGATGATATGCAAATAGGAAAATGGCTGAAATCCCATGACAATGCACTTATAGATGATAGCACAGTTAATATTATTGATGGTAAGGTTAAACAAGAGATGTCACTCAAGCTCCAGAATGTTGAATGTGGAGAACTAGACTTAGAACTTGAATGGATGCCTCTTGGTCATTAG 1011 0.3838 MAMNNRRLEFGRPASGKRRMKDLLLHKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGTHISKINSVTLDEWSEEEIDAMIEVGGNASANSIYEAYLPEGYTKPASDASHEQRAKFIRSKYEHQEFLKPSLRIVSGKSSSHKNTFKASFSKRLMDSFRKSTSSSKNMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTIIKSNLNPVWNEELMLSVPEEFGQLSLQVYDHDMFSADDIMGEADIDLQPLITSAMAFGDAGMFDDMQIGKWLKSHDNALIDDSTVNIIDGKVKQEMSLKLQNVECGELDLELEWMPLGH* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0550 336 SMART arf_gap_3 18 139 IPR001164 GO:0005096
Lan12g0550 336 Pfam C2 domain 181 270 IPR000008 -
Lan12g0550 336 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Lan12g0550 336 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Lan12g0550 336 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Lan12g0550 336 CDD ArfGap 20 126 - -
Lan12g0550 336 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 335 - -
Lan12g0550 336 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Lan12g0550 336 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Lan12g0550 336 SMART C2_3c 181 276 IPR000008 -
Lan12g0550 336 Gene3D C2 domain 178 335 IPR035892 -
Lan12g0550 336 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 180 323 IPR035892 -
Lan12g0550 336 Gene3D Arf GTPase activating protein 4 138 IPR038508 -
Lan12g0550 336 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Lan12g0550 336 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 335 IPR044518 GO:0005096|GO:0005543
Lan12g0550 336 CDD C2_ArfGAP 179 323 - -
Lan12g0550 336 ProSiteProfiles C2 domain profile. 163 277 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0550 Lan-Chr12 12210624 12214595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0550 10 334 C2H2 Transcription Factor Family AT4G21160 72.561 0.0 519