Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0533 ATGGCTTCTGGTGCTATATTCTCGTCGCTGCGGCGGCGCCGGTTGCCGTCGATCGAGACGTTCCTCGCATCGGTTGACCTCAGCGACGTGGCGCTTGTACAGACCCTCATCTCCGTCGCCGGTGAACTTGTCTCGTGTTTCTCTGATCACCGGTTCCCTTTCCAGCGCAAGAATTCGCGGTCCCTCGTTCGAAAAATTGAAGTTTTTCAACTCCTGTTGGAATGTTTGAAGGATTTCCAAAAATTGAGTTTTCCATCTCCCACTGTTGTGCTATGCTTGAAGGAGCTATATCTGCTTCTTTATCGGTCCAAGATTCTTTTGGATTATTGTGTGCAATCGAGTAAGCTGTGGCTTTTGCTTCATAACCATTCAATTTCAGGTCATTTCCACGATTTGAACCAAGAAATTTCGACCCTTTTGGATGTTTTTCCCATTAAAGAAGTTGAATTGATTGATGATGTTAGGGAACATGTTGAATTGTTGAGGAAACAGGGTAGGAATGCTAAACTGTTTGTAGATAAGAATAATGATGCCCTTAGGATAAGGTTCTTTTCCTTCCTTGATGAGTTTGAGAATGATAGGATTCCTAATTGTAATGAATTAAAAGCTTTCTTTGTGGATAAATTGAAGATTTCAGATGCTAGGAGTTGTAGAGCTGAAATTGAATCCTTGGAGGAGCAGATTGTTAATCATGAGGGTGATGTTGAGCCGACGATTTCTGTGCTTAATGGTTTGGTTGCAATGACGCGGTATTGCAGGTTTTTGCTCTTTGGATTTGAGGAAGATGAGCTTGATTTGGAAAATGGTAATCAGAAGAAGGCTATGAAGAGATTGATTACTCAAGAAATCGCCGAAACTTTTCTGACTACTCCAAAGGACTTTTGCTGTCCGATATTGTTGGATTTGATGTGCGACCCTGTGATAATATCGACTGGACAAACTTATGATCGGAGGTCTATATCGAGGTGGATGGAGGAAGGGCATTGTACTTGTCCGAAAACGGGGCAAATGCTTGCCCACACCCGCCTTGTTCCTAATCGTGCTCTTAGGAACTTGATCATGCATTGGTGCACTGCAAATGGTATACCCTATGATCCGCCAGAGGTTGTCGATGCATCGGCTGAAGCAATTGCATCAGCTTGCCCATCCAGAGCCGTTCTTGAGGCCAACAGAGCTACATCGACACTTCTTATTCAGCAGCTAGCTGATGGTTCACAACCTGCAAAGACTATAGCTGCTCGAGAGATACGATTGCTAGCAAAAACTGGAAAAGAAAACCGTGCTTTCATTGCAGAAGCAGGAGCAATTCCCTATCTTCGAAACTTACTGTCGTCTCCTAATGCTGTTGCACAGGAGAATTCCATTACTGCATTGCTCAACCTATCCATTTATGACAAAAATAAAAGTCGAATCATGGATGAGGAAGGGTGTCTGGGGTCAATTGTTGAGGTGCTGAGATTTGGGCATACAACAGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTCTCTGTTGTTCATGGCTACAAAAAAAGAATTGCAGATAATGTACAAGCTGTTGAAGCATTGCTAGGTCTATTGCAAGAAGGGACCCCAAGAGGAAAGAAGGATGCTGTAACAGCATTATTCAATCTTTCCACCCACACTGAGAATTGTGTGAGAATTATAGAGGCGGGAGCAGTAACAGCTCTAGTCAGCGCTTTGGGGAATGAAGGAGTTTCCGAGGAAGCAGCTGGTGCCCTTGCATTGATTGTTCGTCAGTCCGTTGGGGCAAAAGCAGTGGTAATGGAGGAAGCAGCAGTAGGTGGGTTGATAGGAATGATGCGCTGCGGAACAGCAAGAGGTAAAGAGAATGCAGTTGCAGCGTTGCTGGAGTTGTGCAGGAGCGGTGGCGCTGCTGCAATTCAAAGGGTGATTAGAGCGCCAGCTTTGGCTGGACTACTTCAAACCCTGCTTTTTACAGGAACAAAGCGAGCACGACGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAGAATGCATCTCTACACTATGGTGGATTAGGTGTGGGGTATACATTTGCTAGCAATTCTGTTTCGACAAGGGATCACACAAGCTTTGCTGATGATGTTTCAGTACCAATGTCCATTTCTGTTCCTGTTTTATAG 2157 0.4469 MASGAIFSSLRRRRLPSIETFLASVDLSDVALVQTLISVAGELVSCFSDHRFPFQRKNSRSLVRKIEVFQLLLECLKDFQKLSFPSPTVVLCLKELYLLLYRSKILLDYCVQSSKLWLLLHNHSISGHFHDLNQEISTLLDVFPIKEVELIDDVREHVELLRKQGRNAKLFVDKNNDALRIRFFSFLDEFENDRIPNCNELKAFFVDKLKISDARSCRAEIESLEEQIVNHEGDVEPTISVLNGLVAMTRYCRFLLFGFEEDELDLENGNQKKAMKRLITQEIAETFLTTPKDFCCPILLDLMCDPVIISTGQTYDRRSISRWMEEGHCTCPKTGQMLAHTRLVPNRALRNLIMHWCTANGIPYDPPEVVDASAEAIASACPSRAVLEANRATSTLLIQQLADGSQPAKTIAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSPNAVAQENSITALLNLSIYDKNKSRIMDEEGCLGSIVEVLRFGHTTEARENAAATLFSLSVVHGYKKRIADNVQAVEALLGLLQEGTPRGKKDAVTALFNLSTHTENCVRIIEAGAVTALVSALGNEGVSEEAAGALALIVRQSVGAKAVVMEEAAVGGLIGMMRCGTARGKENAVAALLELCRSGGAAAIQRVIRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYTFASNSVSTRDHTSFADDVSVPMSISVPVL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0533 718 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
Lan12g0533 718 Coils Coil 214 234 - -
Lan12g0533 718 CDD RING-Ubox_PUB 294 336 IPR045210 -
Lan12g0533 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Lan12g0533 718 Gene3D - 368 517 IPR011989 -
Lan12g0533 718 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 695 - -
Lan12g0533 718 SUPERFAMILY RING/U-box 278 364 - -
Lan12g0533 718 SUPERFAMILY ARM repeat 394 671 IPR016024 -
Lan12g0533 718 SMART arm_5 510 548 IPR000225 GO:0005515
Lan12g0533 718 SMART arm_5 423 463 IPR000225 GO:0005515
Lan12g0533 718 SMART arm_5 549 587 IPR000225 GO:0005515
Lan12g0533 718 Gene3D - 27 146 IPR036537 GO:0007166
Lan12g0533 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Lan12g0533 718 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Lan12g0533 718 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Lan12g0533 718 Pfam U-box domain 291 360 IPR003613 GO:0004842|GO:0016567
Lan12g0533 718 Gene3D - 518 679 IPR011989 -
Lan12g0533 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Lan12g0533 718 PANTHER U BOX DOMAIN-CONTAINING 12 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0533 Lan-Chr12 12060361 12063130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0533 1 718 U-box Gene Family AT1G29340 67.935 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0533 - - gmx:100811153 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0533 12 12060361 12063130 Lan4g0310 4 5162138 5164792 PCT
Lan4g0310 4 5162138 5164792 Lan12g0533 12 12060361 12063130 PCT