Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0518 ATGTTCACGAACCCTCAACTCTTCTATCAAAAAACTCAAAAGCATGACACCGTTGCTTCCCACCACTCACTACAACCTTCAACCTTAACAAACAACAAAGTGCAATCTTCATGCAACAACACTAATAATGGAGACTATGACTTAGCATCAAAGGCTTTCAAATTTGTCACTGGCTTCAACTTCTCCACCTGGTTCCAAATTTCCAACTGTTCATACACACATATAACCAAAATAGAACTCCCATCCAAAAATCTAACCGGCATAGTTTCATGGAGTTACCTCAAAAACATGTCAAACTTAGAAGTTCTTGATCTCTCTGGGAATTCTCTACAAGGTAAAATACCAACTTGGCTTTGGTCTAGTACAACCTTATTAGGAATAAACCTCTCTAGAAACAAGTTCGGAGGTAGCATCATCATTGGGTCTAAAAACACTTCGTTTTCTTCAATTCAAAATCTCAATCTTTCACAAAACAGATTCACCAATTGGGTTCAACTTTCTACTTTTCCAAACCTCAAAAGCCTCGACCTTTCACACAACAACCTGGGAACAACACTCCCGTACAGTTTCCAAAACCTCACTAATCTACAACACCTTGATCTATCAAGTTGCAATCTCAAAGGAACCATAAAACTAGTTTCTTCTCTTCACTCACTTCTCTACTTAGACTTATCAAACAACACTTTCAACGGTAATTTTCCCTCTGATTTCCCTCCTCTGGAAACTCTCAATTTGTTGAACATCTCATTCAACAACTTCACCTTCAATAACTACTCATCATTTCTTATCTCTAAAGAGTTCAAGAGATTCGGCAAATCAGCATTTATTAAAGCTGGTAATAACAATGAAGAATATTCCAACACTCCATCATTCCCACAACCCCATGTAGAAAAACAAGCCATTCATCATCATCATCATAAAAAACACAAACCTAAACATAAAACATTAATTATTGCACTGTGTTCTGCATCATCATCAGCACTTGTTCTTCTCCTTTTGTTCGTTTTTACAATTTACAAAAGGAAGAAGCAACGTTGTAAGAGGGCAAAATGGGAAATAAATAAACCAGTGGCACATGGGATGATGGAGAAATCATCAGGGCCGTTCGTTTTTGAGACAGAATCAGGATCAACGTGGATGGTGGAACTGAAGGAGCCAAGCTCTGCAGCAGTGGTGATGTTTGAAAAGCCATTGATGAAGCTGAACTTCAGAGACCTCATCATTGCCACGTCACACTTTGGGAAAGACTCGCAGCTAGCTGAGGGTACCTCTGCTCCCGTCTACAGGGCTGTACTCTGTGGTGAGCTTCACGTGGCGATAAAGGTACTGGAGTACGCCAGAGACGTTGATCGTGATGACTGTGTCGCTATGTTCGTTGACCTCTCCAAACTCAAGCACCCAAATTTGTTGCCCCTTGCTGGTTACTGCATTGCAGGTAAGGAGAAGCTGGTATTGTATGAGTATTTGGCAAACGGTGATCTAGGAAGATGGCTACACGAGCTCCCAACAGGTGATACAAATGTGGAAGATTGGAGTGATGATAGGTGGGAGATTCAAAATAGCCACATCAACGATGGCTCCCCAGAAAAGATGGGTTGGCTAACACGACATCGTATCGCAGTTGGAATAGCACGCGGCCTAGCCTATCTTCACCATGCAGGATCAAAACCTATTGTACATGGCCACCTAATCGCTTCAAACATTTTACTCGCCGATGATTTTGAGCCTCGGATATCTGATTTCGGGTTACGGGTTGACCCAAACCTAAATTATGATACCGAAGCTGACGTGTATTGTTTTGGAGTTATATTGATGGAATTGTTGACCGGGAAGGTTGGGACGACGGAAACAATTGCGGCAACAAGGAAGGCCGTAAGGGACGGATATAGCGTTAGGGTTTTGGATGAAAAGTTAGAGCTTAGTGGCGACTCGGTGAATGAGATGGTGGAGAGTCTAAGAGTGGCATACCTTTGTACAGCTGAGTCAACTAAGAAGAGGCCCACCATGCAACAGGTCTTGGGTTTGCTAAAAGACATTCGTTAA 2043 0.4195 MFTNPQLFYQKTQKHDTVASHHSLQPSTLTNNKVQSSCNNTNNGDYDLASKAFKFVTGFNFSTWFQISNCSYTHITKIELPSKNLTGIVSWSYLKNMSNLEVLDLSGNSLQGKIPTWLWSSTTLLGINLSRNKFGGSIIIGSKNTSFSSIQNLNLSQNRFTNWVQLSTFPNLKSLDLSHNNLGTTLPYSFQNLTNLQHLDLSSCNLKGTIKLVSSLHSLLYLDLSNNTFNGNFPSDFPPLETLNLLNISFNNFTFNNYSSFLISKEFKRFGKSAFIKAGNNNEEYSNTPSFPQPHVEKQAIHHHHHKKHKPKHKTLIIALCSASSSALVLLLLFVFTIYKRKKQRCKRAKWEINKPVAHGMMEKSSGPFVFETESGSTWMVELKEPSSAAVVMFEKPLMKLNFRDLIIATSHFGKDSQLAEGTSAPVYRAVLCGELHVAIKVLEYARDVDRDDCVAMFVDLSKLKHPNLLPLAGYCIAGKEKLVLYEYLANGDLGRWLHELPTGDTNVEDWSDDRWEIQNSHINDGSPEKMGWLTRHRIAVGIARGLAYLHHAGSKPIVHGHLIASNILLADDFEPRISDFGLRVDPNLNYDTEADVYCFGVILMELLTGKVGTTETIAATRKAVRDGYSVRVLDEKLELSGDSVNEMVESLRVAYLCTAESTKKRPTMQQVLGLLKDIR* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0518 680 Gene3D Transferase(Phosphotransferase) domain 1 587 680 - -
Lan12g0518 680 SUPERFAMILY Protein kinase-like (PK-like) 403 676 IPR011009 -
Lan12g0518 680 Pfam Leucine rich repeat 74 134 IPR001611 GO:0005515
Lan12g0518 680 Pfam Leucine rich repeat 149 206 IPR001611 GO:0005515
Lan12g0518 680 Gene3D Transferase(Phosphotransferase) domain 1 489 586 - -
Lan12g0518 680 PRINTS Leucine-rich repeat signature 100 113 - -
Lan12g0518 680 PRINTS Leucine-rich repeat signature 169 182 - -
Lan12g0518 680 Gene3D Phosphorylase Kinase; domain 1 373 488 - -
Lan12g0518 680 ProSiteProfiles Protein kinase domain profile. 413 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0518 680 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 34 679 - -
Lan12g0518 680 Gene3D Ribonuclease Inhibitor 146 308 IPR032675 -
Lan12g0518 680 SUPERFAMILY L domain-like 66 261 - -
Lan12g0518 680 PANTHER KINASE, PUTATIVE-RELATED 34 679 - -
Lan12g0518 680 Pfam Protein tyrosine and serine/threonine kinase 416 584 IPR001245 GO:0004672|GO:0006468
Lan12g0518 680 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515
Lan12g0518 680 Gene3D Ribonuclease Inhibitor 23 145 IPR032675 -
Lan12g0518 680 SMART LRR_typ_2 169 192 IPR003591 -
Lan12g0518 680 SMART LRR_typ_2 193 223 IPR003591 -
Lan12g0518 680 SMART LRR_typ_2 97 121 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0518 Lan-Chr12 11869635 11873543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0518 75 679 Receptor kinase-like Gene Family AT5G07280 31.692 9.49e-69 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lan12g0518 PK_Tyr_Ser-Thr 1.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0518 - - gmx:100788556 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0518 12 11869635 11873543 Lan16g1204 16 19713380 19716965 PCT
Lan16g1204 16 19713380 19716965 Lan12g0518 12 11869635 11873543 PCT