Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0490 ATGGATTCGAATTCTCATGGAAACCTCGATGAGCAGATTTCTCAGCTCATGCAGTGCAAACCCTTGTCCGAGCAAGAGGTAAGGGCCTTGTGTGATAAGGCAAAGGAAATTTTGATGGAAGAGAGTAATGTCCAGCCTGTGAAAAGCCCTGTTACAATTTGTGGTGATATTCATGGGCAATTCCATGACCTTGCAGAGCTGTTCCGCATTGGTGGGAAGTGTCCAGATACAAATTACTTATTTATGGGAGATTATGTTGACCGTGGCTATTATTCAGTTGAAACCGTGACGCTTTTGGTTGCCCTTAAAGTGCGTTATCGTCAGCGTATCACAATTCTGAGAGGAAATCATGAAAGTCGTCAGATTACTCAAGTTTATGGATTTTATGATGAATGCCTACGGAAGTATGGCAGTGCTAATGTTTGGAAAACCTTCACTGATTTGTTCGATTACTTTCCATTGACAGCATTGGTTGAATCTGAAATCTTTTGCCTTCATGGTGGGCTGTCCCCATCTATTGAAACCCTTGATAACATACGTAACTTTGACCGTGTACAAGAAGTTCCTCATGAGGGGCCTATGTGTGATCTTCTATGGTCCGATCCGGATGATCGTTGTGGTTGGGGAATCTCTCCAAGAGGTGCTGGATATACCTTTGGCCAGGACATATCTGAACAATTTAACCATACCAATAGCTTGAAGCTTATTGCTAGAGCTCATCAGTTGGTTATGGAAGGATATAACTGGGGTCATGATCAAAAAGTGGTTACCATATTCAGTGCACCTAATTATTGTTATCGCTGTGGGAACATGGCATCCATCCTTGAAGTTGATGACTGCAAAGGACACACATTCATTCAGTTTGAGCCAGCTCCAAGGAGGGGAGAGCCGGACGTAACCCGGAGAACACCCGATTACTTCCTATGA 927 0.4347 MDSNSHGNLDEQISQLMQCKPLSEQEVRALCDKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKTFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0490 308 Gene3D - 1 308 IPR029052 -
Lan12g0490 308 PRINTS Serine/threonine phosphatase family signature 50 77 IPR006186 GO:0016787
Lan12g0490 308 PRINTS Serine/threonine phosphatase family signature 79 106 IPR006186 GO:0016787
Lan12g0490 308 PRINTS Serine/threonine phosphatase family signature 112 136 IPR006186 GO:0016787
Lan12g0490 308 PRINTS Serine/threonine phosphatase family signature 147 173 IPR006186 GO:0016787
Lan12g0490 308 PRINTS Serine/threonine phosphatase family signature 176 203 IPR006186 GO:0016787
Lan12g0490 308 PRINTS Serine/threonine phosphatase family signature 232 252 IPR006186 GO:0016787
Lan12g0490 308 PRINTS Serine/threonine phosphatase family signature 254 270 IPR006186 GO:0016787
Lan12g0490 308 SUPERFAMILY Metallo-dependent phosphatases 7 293 IPR029052 -
Lan12g0490 308 CDD MPP_PP2A_PP4_PP6 8 292 - -
Lan12g0490 308 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2 308 - -
Lan12g0490 308 SMART pp2a_7 22 292 IPR006186 GO:0016787
Lan12g0490 308 Pfam Calcineurin-like phosphoesterase 50 241 IPR004843 GO:0016787
Lan12g0490 308 ProSitePatterns Serine/threonine specific protein phosphatases signature. 113 118 IPR006186 GO:0016787
Lan12g0490 308 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0490 Lan-Chr12 11537983 11544272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0490 14 238 Calmodulin-binding Proteins AT5G63870 33.708 1.19e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0490 K04382 - gmx:100782279 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0490 12 11537983 11544272 Lan1g1729 1 31516395 31523443 LSH