Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0472 ATGCGTTCCTATTCCTTAACCATTCCTCCAACCAACACTCGTTTCTACCACCATGTCCCCACTTCTCCAACCCCACTCTCTCTCCGACCCATTTTCACTTACCCGACCCGAACCACTTTCGGGTCACTCAGAACAAAAGCCTCCATCAACGGTGGCCACGTTGCATCTGAGGAGGCTTCTCAGTTGAGCTTCTATGAGCTTCTGGGTATTCCATTATCGGGTTCGTTAATGGAAATCAAGCAAGCGTATAAGCAACTTGCACGAAAGTATCACCCAGATGTGTCTCCTCCGGGTCGAGTTGAGGAATATACGAAGAGGTTTATTCTTGTTCAGGAGGCTTATGAGACTCTTTCGGATCCTAGACTTAAAGCTATGTATGATAGAGACTTGGCTAGGGGTATTCATCTAGCTTTCAATGCTCGTACACGCTATCATGATGATGATGATGTGGTTGAACAAAAAAGTCAATGGAAAAGTCGTTGGCAATCGCAATTGTATGAACTGAAGAGAAGAAGTGAGAGCAAGAATGGTGGAGGGAATATGTCATGGGCAGCTCGAATGCGCGAACAGAGGGATCAATAA 582 0.4588 MRSYSLTIPPTNTRFYHHVPTSPTPLSLRPIFTYPTRTTFGSLRTKASINGGHVASEEASQLSFYELLGIPLSGSLMEIKQAYKQLARKYHPDVSPPGRVEEYTKRFILVQEAYETLSDPRLKAMYDRDLARGIHLAFNARTRYHDDDDVVEQKSQWKSRWQSQLYELKRRSESKNGGGNMSWAARMREQRDQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0472 193 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 30 192 - -
Lan12g0472 193 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Lan12g0472 193 SMART dnaj_3 62 122 IPR001623 -
Lan12g0472 193 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 30 192 - -
Lan12g0472 193 CDD DnaJ 64 119 IPR001623 -
Lan12g0472 193 SUPERFAMILY Chaperone J-domain 61 134 IPR036869 -
Lan12g0472 193 Pfam DnaJ domain 64 127 IPR001623 -
Lan12g0472 193 PRINTS DnaJ domain signature 65 83 IPR001623 -
Lan12g0472 193 PRINTS DnaJ domain signature 83 98 IPR001623 -
Lan12g0472 193 PRINTS DnaJ domain signature 102 122 IPR001623 -
Lan12g0472 193 PRINTS DnaJ domain signature 187 193 IPR001623 -
Lan12g0472 193 Gene3D DnaJ domain 48 157 IPR036869 -
Lan12g0472 193 MobiDBLite consensus disorder prediction 170 193 - -
Lan12g0472 193 ProSiteProfiles dnaJ domain profile. 63 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0472 Lan-Chr12 11095461 11098384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0472 54 127 C2H2 Transcription Factor Family AT1G74250 38.961 3.11e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0472 - - lang:109341995 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0472 12 11095461 11098384 Lan12g0472 12 11095461 11098384 ECH