LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan12g0463	ATGCCTAACTCTAATCCAAGAAGAAGCAAGGGTCGTCAAAGGATCGAGATGAAAAAGATAACCAATGAAAGCAACCTACAAGTCACATTCTCCAAACGTCGCAGTGGGCTTTTCAATAAAGCCAGTGAGCTTTCAACTCTTTGTGATGCACAAGTTGCGCTGGTTGTTTTCTCCCCTGGAAACAAGGTTTTCTCTTTTGGTGACCCTAGTGTTGATGCTGTCATTAGCCGCTATCAAATGAGGGACCAACCACAAAACTTGAGGAACATGTATTTTCTAGAGGCTCACCGCAATACCAATGTTCAGGAGCTTAATGATAAGATTAATCGGATCAATGAAGATCTTGAGATTGAGAAAAAATGTAGTGAAGCGCTGGCTAAGCAACGAAAAGAGGCACAAGAGAAGTTCTGGTGGGCTTCTCCAATTGAAGAGATGAATGGAGATCAACTTGATCAAATGAAGTTGGCTCTTGAGAATCTGAAGAAGAATGTCATTGATGTTGTGGAAAGCCAGAATGTCATTCAGGGTGGTTCTGCTATACCACCTCCTCACTTTTTTACAGGTGGCCCATCTTCTTCAAACAACCCTCTGCCGCAACATCAGCCACCACCTCAGCAGTTTCCGGTGTATCCATCGCCACCACCACAATCACAACCACATATGCTTCAGAACCAGCCCATGATGCTGCCCAATCATATGTTTAATGGGGCCATGGTGCATCACCCTGGATTCAATAATCATAACATGGGAGGATATGGACCTGGAGGTGGATTCTTTTGA	780	0.441	MPNSNPRRSKGRQRIEMKKITNESNLQVTFSKRRSGLFNKASELSTLCDAQVALVVFSPGNKVFSFGDPSVDAVISRYQMRDQPQNLRNMYFLEAHRNTNVQELNDKINRINEDLEIEKKCSEALAKQRKEAQEKFWWASPIEEMNGDQLDQMKLALENLKKNVIDVVESQNVIQGGSAIPPPHFFTGGPSSSNNPLPQHQPPPQQFPVYPSPPPQSQPHMLQNQPMMLPNHMFNGAMVHHPGFNNHNMGGYGPGGGFF*	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan12g0463	259	PRINTS	MADS domain signature	12	32	IPR002100	GO:0003677\|GO:0046983
	Lan12g0463	259	PRINTS	MADS domain signature	32	47	IPR002100	GO:0003677\|GO:0046983
	Lan12g0463	259	PRINTS	MADS domain signature	47	68	IPR002100	GO:0003677\|GO:0046983
	Lan12g0463	259	ProSiteProfiles	MADS-box domain profile.	10	70	IPR002100	GO:0003677\|GO:0046983
	Lan12g0463	259	PANTHER	MADS BOX PROTEIN	10	171	-	-
	Lan12g0463	259	Gene3D	-	91	174	-	-
	Lan12g0463	259	SUPERFAMILY	SRF-like	11	91	IPR036879	GO:0003677\|GO:0046983
	Lan12g0463	259	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED	10	171	-	-
	Lan12g0463	259	SMART	madsneu2	10	69	IPR002100	GO:0003677\|GO:0046983
	Lan12g0463	259	Coils	Coil	150	170	-	-
	Lan12g0463	259	MobiDBLite	consensus disorder prediction	196	220	-	-
	Lan12g0463	259	MobiDBLite	consensus disorder prediction	176	228	-	-
	Lan12g0463	259	CDD	MADS_MEF2_like	11	79	IPR033896	GO:0000977\|GO:0045944
	Lan12g0463	259	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	19	66	IPR002100	GO:0003677\|GO:0046983
	Lan12g0463	259	Gene3D	-	22	90	IPR036879	GO:0003677\|GO:0046983
	Lan12g0463	259	Coils	Coil	98	121	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan12g0463	Lan-Chr12	10876540	10877449	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan12g0463	7	195	Type I MADS-box Gene Family	AT5G60440	51.562	3.97e-51	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lan12g0463		SRF-TF	8.5e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan12g0463	-		-	lang:109339900	298.13