Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0462 ATGAGTTTGCTTCATGTAGTTGGGTTTGGTTTAAAAGTAGGGCATCCACTTTTAGTGCTATGTTGCTGGCTTTTGTCTGTACTTTATCTCAATTGGTTCTTTAGTAGTGGAACTATGGATAGCACAAAGATGAGTTTTTTGGGTGATGGTGGTAGCAAGAGCATGTGGCTCAAATGGTGGGAGAAGATCTGTGGCTGCAAAGTTCATCAACATTACTACCAGTATATATGGTCCCAGAAAGTGAAGAGAAGTTTATGGAAGAAGCTTTTGGTTTCTTGGGTTGTTGGTTGGACCATGGTGTCTTTATGGATCTTCTGTTCCATGAGCTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCAAGCATGTGTGATGAAAGGGCTAGGATGCTCCAGGATCAGTTTAATGTCAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCAACTTTCCATCATGCTAAGAGCCCCTCAGCTATAGATCAGAGAACTTTTGCTAAGTACACAGAAAGAACTGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGCAAGGGTGCTCCGATCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGACTATTAAGAGGATGGATACTGTGGGGGAGAAACAAGTACAAAAGGATGATTATGATCCAGAGAAATTGGAGCCATCCCCCATTCAGGAAGAATATGCTCCTGTCATCTTTGCACAGGATACACTTTCACATGTGATTTCTGTTGATGTGCTTTCTGGAAAGGAAGACCGTGAGAATGTGGTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTGCTCAAAACAAATCGGCTAGGGGTTATCCTGACATTTGCTGTTTATAAGAGAGATCTTCTGTCAAATGCAACCCCAAATGAAAGAATTCAAGCAACTAATGGGTATCTTGGTGGAGTCTTTGATGTCGAGTCCTTAGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATCGTTAATGTTTATGACATAACAAATCACACGCATCCGATTGCCATGTATGGTTCAAATGCTTCGGGGGATACATTCTATCATGTCAGCACTCTTAACTTTGGAGACCCTTTCAGGAAGCATGAGATGTACTGCAGGTTCAAACAGAATCCACCGTGGCCATGGTTGTCAATAACTACTTCAATTGGCATTCTTGTCATTGCACTCCTTGTTGGACATATTTTCCATGCCACTGTGAATCGAATTGCCAAAGTAGAAGATGATTACCATGAGATGATGGAGCTTAAAAAGCGAGCTGAGGCAGCTGATGTAGCAAAATCCCAGTTTCTTGCGACTGTTTCCCACGAGATCAGAACACCAATGAATGGCGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTTACCCAGCAGGAATTTGTCAGAACCGCACAGGGCAGTGGAAAAGCTCTTGTGTCACTTATAAATGAGGTTTTGGACCAAGCAAAGATTGAAGCTGGTAAGCTAGAGCTTGAAGCTGTGCTCTTTGACTTACGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCTCAAGAAAAAGGAGTAGAGTTGGGAGTTTATGTATCAGATCAGGTTCCTGAGCTACTAATAGGTGATCCAGGAAGATTTCGACAAATAATTACTAATCTCATGGGTAACTCAATTAAGTTCATGGACAAGGGGCATATTTTTGTCACTATTCATCTTGTTGAGGAGGTTGTCCATTCAATAGAAGTTGACAAGGAATCAACGTCAGAAAATACATTGAGTGGTTTCCCAGTAGCTGATAGTCGCCGAAGTTGGGAAGGATTCAAGGCTTTCAGTCAAGAGGGACCTCTTGGTTCTTTCTCATCTTCCTCCGGTGATCTCATCAACTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCTCTTGAAGCTCAGCACCACATCTTCACTCCGTTCATGCAGGTAGGTCCATCCATCTCCCGCAAACACGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTCACCTCATGAATGGTGAAATTGGATTTGTGAGCATACCGAAGATTGGATCAACTTTCACATTCACTGTAGTCTTCACAAATGGACTCCCCAATTCAAATGACTGTAAAACTCAGCAAATCATCAACCAACCTCACCCTGCATCCTCGGAATTTGAGGGCATGACTGCAATGATCATTGACCACAGACCTGTTAGAGCAAAAGTGTCTAGATATCACATTCAAAGGCTTGGCATTCATGTTGAAATGGTTTCAGATTTAAATCAAGGTTTGTCCAATGTGGCCAATGCGAATATTGTTATTAATATGATCCTCATCGAGCAGGAGGTCTGGGATAGAGATTCGGGCATGTCATCTCACTTTGTCAATAACATATCCAAAATTGTTCATGCAGTTCCTCCAAAGATATTTATTCTTGTTAATTCTAGTCGTTCTAGAGCAAGTGCTGTAATATCCAGTGTTCATGATCCCACTATCATCACAAAACCTCTGAGAGCAAGTATGCTTGCAGCCTCATTACAACGTGCGATGGGTGTTCGGAACAAGGGGGCTCATAGAAATAGCGATTTCCCAAGTTTGTCTCTTCGCCATCTTCTTCGTGGGAGAAGAATTTTAATTGTTGATGACAATAGTGTGAACCGCATGGTAGCGGCTGCTGCTTTGAAAAAGTATGGAGCTGAGGTGGTTTGTGTCAGCTGTGGAAAAGAGGCCATCTCTTCACTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATAGATGGGTTTGAAGCTACAAGGACTATTCGGGACATGGAACTTGGCGTGAACAGCGAAGTGTCTGTGGATGACTTTGACAATGTTCCAAACTGGCATGTGCCCATTCTAGCTATGACAGCAGACGTTATCCAGGCAACACAAGAGGAATGCCTGAGGTGTGGAATGGATGGATATGTTTCTAAACCATTTGAAGCCGAACAGCTATATATAGAAGTTTCACGGTTTTTCCAGCCATCTTGA 3090 0.4262 MSLLHVVGFGLKVGHPLLVLCCWLLSVLYLNWFFSSGTMDSTKMSFLGDGGSKSMWLKWWEKICGCKVHQHYYQYIWSQKVKRSLWKKLLVSWVVGWTMVSLWIFCSMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFAKYTERTAFERPLTSGVAYAARVLRSEREQFEKQQGWTIKRMDTVGEKQVQKDDYDPEKLEPSPIQEEYAPVIFAQDTLSHVISVDVLSGKEDRENVVRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLLSNATPNERIQATNGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDITNHTHPIAMYGSNASGDTFYHVSTLNFGDPFRKHEMYCRFKQNPPWPWLSITTSIGILVIALLVGHIFHATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEFVRTAQGSGKALVSLINEVLDQAKIEAGKLELEAVLFDLRAILDDVLSLFSEKSQEKGVELGVYVSDQVPELLIGDPGRFRQIITNLMGNSIKFMDKGHIFVTIHLVEEVVHSIEVDKESTSENTLSGFPVADSRRSWEGFKAFSQEGPLGSFSSSSGDLINLIVSVEDTGEGIPLEAQHHIFTPFMQVGPSISRKHGGTGIGLSISKCLVHLMNGEIGFVSIPKIGSTFTFTVVFTNGLPNSNDCKTQQIINQPHPASSEFEGMTAMIIDHRPVRAKVSRYHIQRLGIHVEMVSDLNQGLSNVANANIVINMILIEQEVWDRDSGMSSHFVNNISKIVHAVPPKIFILVNSSRSRASAVISSVHDPTIITKPLRASMLAASLQRAMGVRNKGAHRNSDFPSLSLRHLLRGRRILIVDDNSVNRMVAAAALKKYGAEVVCVSCGKEAISSLKPPHQFDACFMDIQMPEIDGFEATRTIRDMELGVNSEVSVDDFDNVPNWHVPILAMTADVIQATQEECLRCGMDGYVSKPFEAEQLYIEVSRFFQPS* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0462 1029 Pfam CHASE domain 160 356 IPR006189 -
Lan12g0462 1029 SUPERFAMILY CheY-like 890 1025 IPR011006 -
Lan12g0462 1029 CDD HisKA 444 505 IPR003661 GO:0000155|GO:0007165
Lan12g0462 1029 ProSiteProfiles Histidine kinase domain profile. 451 719 IPR005467 -
Lan12g0462 1029 ProSiteProfiles Response regulatory domain profile. 747 868 IPR001789 GO:0000160
Lan12g0462 1029 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 498 715 IPR036890 -
Lan12g0462 1029 ProSiteProfiles CHASE domain profile. 157 383 IPR006189 -
Lan12g0462 1029 SUPERFAMILY CheY-like 743 870 IPR011006 -
Lan12g0462 1029 SMART CHASE_2 157 358 IPR006189 -
Lan12g0462 1029 SMART REC_2 893 1022 IPR001789 GO:0000160
Lan12g0462 1029 Pfam His Kinase A (phospho-acceptor) domain 444 509 IPR003661 GO:0000155|GO:0007165
Lan12g0462 1029 CDD HATPase_EvgS-ArcB-TorS-like 561 717 - -
Lan12g0462 1029 CDD REC_hyHK_CKI1_RcsC-like 895 1019 - -
Lan12g0462 1029 Gene3D - 508 719 IPR036890 -
Lan12g0462 1029 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 556 718 IPR003594 -
Lan12g0462 1029 PRINTS Bacterial sensor protein C-terminal signature 644 658 IPR004358 GO:0016310|GO:0016772
Lan12g0462 1029 PRINTS Bacterial sensor protein C-terminal signature 662 672 IPR004358 GO:0016310|GO:0016772
Lan12g0462 1029 PRINTS Bacterial sensor protein C-terminal signature 679 697 IPR004358 GO:0016310|GO:0016772
Lan12g0462 1029 PRINTS Bacterial sensor protein C-terminal signature 703 716 IPR004358 GO:0016310|GO:0016772
Lan12g0462 1029 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 429 510 IPR036097 GO:0000155|GO:0007165
Lan12g0462 1029 SMART HKATPase_4 556 719 IPR003594 -
Lan12g0462 1029 Coils Coil 421 441 - -
Lan12g0462 1029 CDD PRTases_typeI 847 924 IPR000836 -
Lan12g0462 1029 Pfam Response regulator receiver domain 895 1019 IPR001789 GO:0000160
Lan12g0462 1029 Gene3D - 412 507 - -
Lan12g0462 1029 PANTHER TWO-COMPONENT HISTIDINE KINASE 58 1027 - -
Lan12g0462 1029 Gene3D - 108 160 - -
Lan12g0462 1029 ProSiteProfiles Response regulatory domain profile. 894 1026 IPR001789 GO:0000160
Lan12g0462 1029 Gene3D CHASE domain 161 390 IPR042240 -
Lan12g0462 1029 SMART HisKA_10 444 509 IPR003661 GO:0000155|GO:0007165
Lan12g0462 1029 Gene3D - 888 1028 - -
Lan12g0462 1029 PANTHER HISTIDINE KINASE 3 58 1027 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0462 Lan-Chr12 10808273 10815088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0462 1 1026 Miscellaneous Gene Families AT1G27320 67.049 0.0 1379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan12g0462 CHASE 9.6e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0462 K14489 - gmx:100776798 1704.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0462 12 10808273 10815088 Lan1g1705 1 30806801 30814422 LSH