Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0459 ATGGATTGGAATGCAAAATCTCCCTCACAGTGGGATTGGGAGCATCAACTCTTACTCAATGCAAAAGCAACTGAAATTTCCAAATCACTGCCACCAAATTGGAACGGTGAAACAAACCAAGAGATCAATGTTGGGTTGTTGGATATATCTGTCGGCAGTGGTTGTTCTGGGTCTGAGCTAATACATGCTTCGTCAAGGAGCTCAATATCAGCTTCCATCAATTCAACATCAAATAGGGATAGCAAAACATCTATGTACACTTTTGAAACTTCACTTGATGATTCCAGTGGTAAAAGAGAATTGTCTAAAGTTGAAATTTCTCATGGACTAGAGCATTCGTCTGCCTCTGGTGAACCACTGCTCTCTCTGAAACTTGGTAAGCGACTGTACTTTGAGGATGTCTACCCTGGAAGTATTTCAAAGAGCCCTTCTTTCTCTGGGGCACCTATGTCATCTTTGAGTACTGGTAAAAAATGCAAGTCCAATGGTCAGAATGTACAATTTCCACGCTGCCAGGTTGAAGGCTGTGGCCTTGATCTCTCATCAGCTAAAGAGTACCATTGCAAACATAGAGTTTGTGACAGTCATTCCAAATCCCCTAAGGTGCTAATAGGTGGTACGGTGTGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGCCTGTCAGAGTTTGATGAGAAAAAGAGAAGCTGCAGACGACGCCTTTCAGATCACAATGCAAGGCGCCGTAAACCTCATCCAGTAGCCACCCGATTAAATCAACCATCATCACCCTATGATGGGAGGCAACATATGAGCCCTTTGGCTCATTCAAGGACGGCTACAAATTTAGTTTGGCAAGACACACACAGCAGCAAGCTTCCCCAGACAAAAGATTTTCTATTCAATCCGGCCAAAGCCAATAATGAGATACCAAGTATTGGCACTACAGTTTCTTATGATTTCAACCCCCCTTTTACACTCAAAGGCATTGCAACCAACAGTGCTCATCCAGGCTTAGAAGACTCGATTACCTCCTCCGATCATAATGTTACACAAGATTTTCACCATGCTCTCTCTCTTCTGTCAACCAACTCCTGGGGGGGTTCACATGAGCACAAGCTCATTTCTGTAGAACCACCCAACAATGCAATCGTAACCGGTCAGCCTGTAACACATGCTATGGGTCAGTGCTTACCTCCAGAATATTGGCATATTGGTCAACAACCAGTGAATTCCAGCATGTGGATCTCCTACTCAAATTGTGATGATAGCAATCGATTCCAAGAATTTCAACTGTTCAGAGAACCTTATGAGTCTGGTTTTCCTCACAACCAGTTGGGTTAA 1326 0.4374 MDWNAKSPSQWDWEHQLLLNAKATEISKSLPPNWNGETNQEINVGLLDISVGSGCSGSELIHASSRSSISASINSTSNRDSKTSMYTFETSLDDSSGKRELSKVEISHGLEHSSASGEPLLSLKLGKRLYFEDVYPGSISKSPSFSGAPMSSLSTGKKCKSNGQNVQFPRCQVEGCGLDLSSAKEYHCKHRVCDSHSKSPKVLIGGTVCRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPHPVATRLNQPSSPYDGRQHMSPLAHSRTATNLVWQDTHSSKLPQTKDFLFNPAKANNEIPSIGTTVSYDFNPPFTLKGIATNSAHPGLEDSITSSDHNVTQDFHHALSLLSTNSWGGSHEHKLISVEPPNNAIVTGQPVTHAMGQCLPPEYWHIGQQPVNSSMWISYSNCDDSNRFQEFQLFREPYESGFPHNQLG* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0459 441 MobiDBLite consensus disorder prediction 229 266 - -
Lan12g0459 441 SUPERFAMILY SBT domain 169 247 IPR036893 GO:0003677|GO:0005634
Lan12g0459 441 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Lan12g0459 441 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 440 IPR044817 GO:0003677
Lan12g0459 441 MobiDBLite consensus disorder prediction 234 248 - -
Lan12g0459 441 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Lan12g0459 441 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 22 440 - -
Lan12g0459 441 Pfam SBP domain 171 244 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0459 Lan-Chr12 10761135 10775851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0459 1 359 SBP-box Gene Family AT1G27360 39.362 4.74e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan12g0459 SBP 3.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0459 - - lang:109328770 469.544