Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0453 ATGTCTCTGAGTAACAACAACATGGAGAATGGTTCCTTCTCTTCTCCATGTCGTGATGCTAATTTTCCAGCTGGTTTGAGAGTTCTAGTTGTTGATGATGATCCAACATGGCTCAGGATTCTTGAAAAGATGCTCAAGAAGTGTTCTTATGAAGTGACTACATGTTGTTTAGCAACAGAGGCCCTAAAAAAGCTTCGCAAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTAAACATGCCCGACATGGATGGTTTCAAGCTTCTTGAGCAAATCGGACTTGAGATGGATCTTCCTCTCATCATGATGTCCGTCGATGGAGAAACAAGCAGGGTGATGAAAGGAGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAACATGTCCTCAGAAAAAGGATACACGAGGCAAGAGAATTTGAAAGTAATGAGAGTTTTGATCATTTGATGAGAAATGGATCAGACCAATCTGATGATGGAAACCTTTTTGCTTTAGAAGATATGACCTCAATGAAGAAAAGGAAAGATATAGATAATAAACATGATGACATAGAGTTTGGAGATTCATCATCAACAAAGAAGGCTAGGGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCAGAAGGACAACAATCAGAAAACAACAAGTGGAATAAAGCATTCAGACTTACCTTCAAAAGATCCAGCAAGTTTTACTTCTCACAACTCCTTAGCCAAGCAACAAAATGATGTTGAAATCGACAGCTTCAATTACTCAGATGGAACATTACAACTTCAGAACATGGATGCTACATGTCATGAAGGTGATCTCAAGGGAATTGTGTTGGAGCCTGCAACAGAAAAAGGAAGAGCTTTGAATAGTAACATTCCTGATCCAAAGATAACAAAGAGTTCTCAGATTGGCCGTAATAATCATTTTGGAACTCTCAAGCCAGAAGGAAATCATGCAATATTTGCTTGCACTATACCATCACAGTACTCTTGGAACGAAGTTCCGAAAAGGCTACTCAAAGAAGAACAAAAGCCACTTGTTAAATTTGAGGATAGCTTTAGCCAGTTAGAGATACATGGAGGCACACAGCATCACATCCATGTTGATCAATCTCAATCCATGGCTTCAATTAACTCCGATCCACCTATAACCGAAAAAGAGGTTGTTGCCTGTTTAGAAACCAAACCTTTGTATGCTAATTACAAAAGTGATTATGCCATTTCTGCATGTTCTATAGGGCCTGCAGCTGACACCTTTCCTACTCAGTCCAAAAGCCTTATGGTGAATGATCAAACTTCAGAACCCATTTTCGCATCAAATTTGGGTTTCAAAACACCAGAATTGAATCTCAGTCGCATTTCAGATCTGGACTTTTACCAAAGAAACTTGCTTTTGGGAGGTGAGATAGCAGCTTATGAACCTTTGGAGGAGGAATTGCATTTCATTTTACTACAACGTGAATACTATAATATGAACTTCGGAATGCAGAATATAGAGATGCCAGAATACTACGATCCAGGGCTTATTGCTGAACTTCCAACACGCTTATGTGATTCTGCAGATTATTCAGTGGTAGATCAAAGTCTATTCATAGCGTGA 1764 0.3912 MSLSNNNMENGSFSSPCRDANFPAGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLATEALKKLRKRKDAYDIVISDVNMPDMDGFKLLEQIGLEMDLPLIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAREFESNESFDHLMRNGSDQSDDGNLFALEDMTSMKKRKDIDNKHDDIEFGDSSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKDNNQKTTSGIKHSDLPSKDPASFTSHNSLAKQQNDVEIDSFNYSDGTLQLQNMDATCHEGDLKGIVLEPATEKGRALNSNIPDPKITKSSQIGRNNHFGTLKPEGNHAIFACTIPSQYSWNEVPKRLLKEEQKPLVKFEDSFSQLEIHGGTQHHIHVDQSQSMASINSDPPITEKEVVACLETKPLYANYKSDYAISACSIGPAADTFPTQSKSLMVNDQTSEPIFASNLGFKTPELNLSRISDLDFYQRNLLLGGEIAAYEPLEEELHFILLQREYYNMNFGMQNIEMPEYYDPGLIAELPTRLCDSADYSVVDQSLFIA* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0453 587 SMART REC_2 26 138 IPR001789 GO:0000160
Lan12g0453 587 Pfam Response regulator receiver domain 28 137 IPR001789 GO:0000160
Lan12g0453 587 CDD REC_typeB_ARR-like 28 142 - -
Lan12g0453 587 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 562 IPR045279 GO:0009736
Lan12g0453 587 Gene3D - 26 195 - -
Lan12g0453 587 Gene3D - 202 265 - -
Lan12g0453 587 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 562 - -
Lan12g0453 587 MobiDBLite consensus disorder prediction 269 294 - -
Lan12g0453 587 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Lan12g0453 587 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Lan12g0453 587 SUPERFAMILY CheY-like 25 152 IPR011006 -
Lan12g0453 587 ProSiteProfiles Response regulatory domain profile. 27 142 IPR001789 GO:0000160
Lan12g0453 587 MobiDBLite consensus disorder prediction 341 360 - -
Lan12g0453 587 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0453 Lan-Chr12 10523452 10527984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0453 22 272 Response Regulator Gene Family AT2G25180 56.693 5.61e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan12g0453 Response_reg 6e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0453 - K14491 lang:109363016 1189.1