Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0435 ATGGTGAAGTATTCAAGAGAGCCCGACAATTCCACCAAATCTTGCAAGGCTAGAGGGGCTGACCTTAGAGTCCATTTTAAGAACACTAGGGAGACAGCGTTTTCCATCAGGAAACTGCCCTTGGTGAAGGCTAAAAGGTACTTGGAGGATGTTCTTGCCCACAAGCAAGCCATTCCATTCCGTAGATTCTGTCGTGGTGTTGGGAGAACAGCCCAGGCAAAGAACAGACATTCTAATGGACAAGGACGCTGGCCTGTGAAATCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGGTTGGATGTCGATGCACTTTACATTTCTCACATCCAGGTCAATCAGGCACAGAGGCAAAGGCGTCGTACCTACCGTGCCCATGGAAGAATTAACCCCTACATGTCATCTCCCTGCCACATTGAGCTTATACTATCTGAAAAGGAGGAACCTGTTAAGAAGGAGCCTGAGTCTCAGTTAGCAACAAGCAAGAAGAAGTCCCAAGTTCTTCGAAGTGGTGCTTCATCTTAA 549 0.4627 MVKYSREPDNSTKSCKARGADLRVHFKNTRETAFSIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQRQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKKSQVLRSGASS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0435 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lan12g0435 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lan12g0435 182 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lan12g0435 182 MobiDBLite consensus disorder prediction 156 182 - -
Lan12g0435 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 182 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lan12g0435 182 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lan12g0435 182 MobiDBLite consensus disorder prediction 168 182 - -
Lan12g0435 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lan12g0435 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lan12g0435 182 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 182 - -
Lan12g0435 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0435 Lan-Chr12 10318224 10320831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0435 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.813 8.87e-118 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0435 K02880 - qsu:112011643 333.183