Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0422 ATGACTTCACAATGGAAAGGCTATGATTTTGGTATGGAGGAGGATGAGATTCAAACACCGGCAAGTAAGTTCCCAAGAATTGGAAATGGAAGAAATGATTTCTCTAACAAGATAGGTACTAGAGGAGGATTAGGGAGTGGTGAGCAACAAAATCCAATATATGATGAAGTAGATGGAGGAGGTTCAACAAACAGGTTCCACAGTTGGCACCACTCTTCAAGAATCATAAGGGTGTCTAGAGCATCTGGTGGGAAAGATAGGCACAGCAAGGTCATGACCTCAAGGGGCTTAAGGGACAGAAGGGTTAGGCTTTCTGTGGCCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTTTGACCAACCAAGTAAAGCAGTGGAATGGTTAATCAAATCAGCTTCTGATGCAATTTCTGAGCTACCTTCATTGAACAACACTTTTCCTGATACCCCTAAAGAACCTAGTGTGGGAATTGAACAAGGATTTGATTCAGCTGAAGCAGAAATAGATGGTAATACCAATTATCATACTCAGCAGCAGCAGCATAACACCAATCAAAGCCAGAACCTTTCTTTGTCGAAGTCTGCTTGTAGCAGCACTTCCGAGACAAGCAAAGGTTCTGGCTTGTCCCTCTCTAGGCCCGATGTACGCGTTAATCGCATCAAGGCCAGAGAGAGGGCAAGAGAAAGAACAGCAAAAGAGAAAGATAGTGAAACTCTCAACAACATTGCTCATCATGTGAATATAAACAACAATCCCATTTCTCAAACATCTTTCACTGAGCTACTCACAGGTGGAACCAGCAACGCAGTTCCCACCACAACTAGTCCTAATAATAATGATTCAATGAGGAACCAAAACCAATGGTGTTCAACAGCACCAATGGATTACTTCACCTCAGGGCTTCTAGGACCTTCTTCTTCTTCTTCAAGAACCAATACTTCTGGATTCTCACAGATTCAACTAGGACATTCCCTTCCTGAGACCATGCAAGTTTCACTTTCACCATTCAGTCTCAGTGGTACTGATCATAACCAAAACCACTCATCAGACCAACAACTTCACCATCATTTCTCATTCACTCATGATCATCTTATGCCAGCTATGGTTACTTCTTCTTCTTCATCCTCTCATCAACATCATCAGCCCAATCATGACTATAATCTCAACTTCACAATCTCACCGGGCCTTGCTGGTTATAATAGGGGGACCCTTCAGTCCAATTCACCATCTCATATGTTGCCTCAACACAATCATATGCAGAGGTTTTCATCATCAACTATAGATGGATCCACTGTACCTTTCTTCATTGGAGCTGCTTCTGCTGCAGCTTCTTCAGCTTCAAACATGGAGAACAATCATCACCAACAACAACAACTTCATTTCTCACCTATTTTTGATGGCCGTGGCTTGCAACTATGCTATGGAGATGGAACCAGGCATTCAGACCAGAAGGGAAAAGGCAAGAACTGA 1479 0.4287 MTSQWKGYDFGMEEDEIQTPASKFPRIGNGRNDFSNKIGTRGGLGSGEQQNPIYDEVDGGGSTNRFHSWHHSSRIIRVSRASGGKDRHSKVMTSRGLRDRRVRLSVATAIQFYDLQDRLGFDQPSKAVEWLIKSASDAISELPSLNNTFPDTPKEPSVGIEQGFDSAEAEIDGNTNYHTQQQQHNTNQSQNLSLSKSACSSTSETSKGSGLSLSRPDVRVNRIKARERARERTAKEKDSETLNNIAHHVNINNNPISQTSFTELLTGGTSNAVPTTTSPNNNDSMRNQNQWCSTAPMDYFTSGLLGPSSSSSRTNTSGFSQIQLGHSLPETMQVSLSPFSLSGTDHNQNHSSDQQLHHHFSFTHDHLMPAMVTSSSSSSHQHHQPNHDYNLNFTISPGLAGYNRGTLQSNSPSHMLPQHNHMQRFSSSTIDGSTVPFFIGAASAAASSASNMENNHHQQQQLHFSPIFDGRGLQLCYGDGTRHSDQKGKGKN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0422 492 MobiDBLite consensus disorder prediction 179 241 - -
Lan12g0422 492 Pfam TCP family transcription factor 83 238 IPR017887 -
Lan12g0422 492 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 492 IPR005333 GO:0003700
Lan12g0422 492 MobiDBLite consensus disorder prediction 219 241 - -
Lan12g0422 492 MobiDBLite consensus disorder prediction 19 60 - -
Lan12g0422 492 PANTHER TRANSCRIPTION FACTOR TCP24 12 492 - -
Lan12g0422 492 MobiDBLite consensus disorder prediction 179 212 - -
Lan12g0422 492 ProSiteProfiles R domain profile. 219 237 IPR017888 -
Lan12g0422 492 MobiDBLite consensus disorder prediction 267 290 - -
Lan12g0422 492 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0422 Lan-Chr12 9911984 9921768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0422 64 492 TCP Transcription Factor Family AT4G18390 41.319 1.24e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan12g0422 TCP 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0422 - - lang:109362619 890.567