Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0408 ATGGACAAATCCCTTAGTTTTCTTCATAGTCTTGTCAAACACTTCAAATTTGGTTCCACTAGTGGGCAAAACAATGAAGCTGAGTTACAGAGAATGGCTTCACAGGAACAAAAAATCTTTGCTTATGAAACCTTAGTTGTTGCAACCAAGAATTTCAATGCTACTCATAAGCTAGGTGAAGGAGGTTTTGGACCTGTCTACAAGGGGAAGCTGAATGATGGGAGAGAAATTGCAGTGAAGAAGTTGTCACAGACTTCAAATCAAGGGAAGAAAGAGTTCTTGAATGAGGCAAGGTTGTTGGCTCGTGTGCAGCACAGGAATGTGGTGAATTTGTTGGGTTATTGTGTCCATGGCATAGAAAAGCTACTTGTTTATGAGTATGTGCCTCATGAGAGTCTTGACAAGCTTCTATTCAAATCCCAAAGGAGAGATGAGCTTGATTGGAAACGTAGATTTGCAATAATCAAAGGGGTGGCAAAAGGGTTGCTTTATCTTCATGAAGACTCACATAATTGCATAATACATCGTGACATAAAGGCAAGTAACATTTTACTTGATGATAAATGGTCACCAAAAATTGCTGACTTTGGCATGGCTCGTCTCTTCCCTGAAGATCAAAGTCAAGTCAATACACGTGTAGCTGGAACCAATGGATATATGGCTCCGGAGTATGTGATGCATGGGAATCTGTCTGTGAAGGCAGATGTGTTTAGCTATGGGGTTTTGGTGTTGGAGTTGATAACTGGCCAAAGAAATTCTGCATTTAACTTAGATGTGGATGCTCAGAGTCTCCTTGATTGGGCATACAAGCAGTACAAGAAAGGAAAGAGCTTAGACATTGTAGATTCCACATTAACATCTTCAATGGAACCTGAACAAGTAGCTATGTGCATTCAGCTGGGTCTGCTATGCACTCAAGGCGATCCACAGCTACGTCCGAATATGCGGCGTGTAGTGATGACGTTGTCTAGGAAACGTGGCCACATGGATGAACCGATGAGGCCAGGGACACCTGGTTCCAGATATAGAAGACCTCGCAGACATTCTGCGATGTCTTCTACAGCCGATATCTCTGATTCGCATACTTCCAACTCAAGCAACAATTGTACCACTTGTACCACTACTGCAACAGAAACAAACTCAGCTACTAATACTATAGAAATAATAGATCCCAAAGGGAAACGTCCAATGCAGGGTTAG 1200 0.4217 MDKSLSFLHSLVKHFKFGSTSGQNNEAELQRMASQEQKIFAYETLVVATKNFNATHKLGEGGFGPVYKGKLNDGREIAVKKLSQTSNQGKKEFLNEARLLARVQHRNVVNLLGYCVHGIEKLLVYEYVPHESLDKLLFKSQRRDELDWKRRFAIIKGVAKGLLYLHEDSHNCIIHRDIKASNILLDDKWSPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSAFNLDVDAQSLLDWAYKQYKKGKSLDIVDSTLTSSMEPEQVAMCIQLGLLCTQGDPQLRPNMRRVVMTLSRKRGHMDEPMRPGTPGSRYRRPRRHSAMSSTADISDSHTSNSSNNCTTCTTTATETNSATNTIEIIDPKGKRPMQG* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0408 399 MobiDBLite consensus disorder prediction 325 368 - -
Lan12g0408 399 SMART serkin_6 52 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0408 399 ProSiteProfiles Protein kinase domain profile. 52 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0408 399 PIRSF TyrPK_CSF1-R 135 389 - -
Lan12g0408 399 PIRSF TyrPK_CSF1-R 50 150 - -
Lan12g0408 399 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 377 - -
Lan12g0408 399 CDD STKc_IRAK 58 324 - -
Lan12g0408 399 Pfam Protein tyrosine and serine/threonine kinase 54 322 IPR001245 GO:0004672|GO:0006468
Lan12g0408 399 Gene3D Transferase(Phosphotransferase) domain 1 128 334 - -
Lan12g0408 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Lan12g0408 399 MobiDBLite consensus disorder prediction 351 368 - -
Lan12g0408 399 Gene3D Phosphorylase Kinase; domain 1 14 127 - -
Lan12g0408 399 SUPERFAMILY Protein kinase-like (PK-like) 37 343 IPR011009 -
Lan12g0408 399 PANTHER RECEPTOR-LIKE KINASE 3 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0408 Lan-Chr12 9591400 9597565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0408 40 336 Receptor kinase-like Gene Family AT4G11530 51.505 5.47e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lan12g0408 PK_Tyr_Ser-Thr 1.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0408 - - gmx:100795769 636.721