Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0402 ATGCTTCCAAATGGTGTTGACCAAGATGGTGAGAAATCAAGGAGCAAGTTATCAAGACACAATTTTGAGCCTATCAAAGAGTACCCAGATGAGAAAGGTGTTGAATTTCTGAGAGATTCAGAGATGGGTGTTGATAAGATTCTTCAGTCAAAACCCACCACCACCAAGTTTGATGGTTCCAGCTCAGGGTTTCAGGAACTGACCCTCAGTTACCTTTGTGACAACACAAAATTGAGTCTTGCTGAGAGAGAGAAAAGATTGCTGAATTATTCCATGGAAAAAGTTAGCCATAAAGGTAAAGAGGTTGTTGGTTTTTCTGAGAATTCAAATCTGGATGGTAAATGGGTGGAAAGAGATTTCTTGAGCTTGAGTGAATCTAGAGAGAATTCTTCAAAGAGATCAATTGAAGAAGTTGAAAAGGAAAGTAATAGGGAGAAGAAACCAAAGTTAGAGACACTTAATCTCTCTCTTGCTTTGCCTGATGTTTCACTTTCTCTTACAGCTTCAAATGCTTTGCAAAATGGTGCTGTTGCTGATCAACAATCACTTAGGCCTAACCCTACAAGGCCTTCAACTACTACTCACACTTCATTCTCAAATGATTATACAACACCTTCTTTGTCTTACTCTTATTCTCACCAATTCTCACATAACCCAAGTTGCTCACTGACTCATAATTCCACTGAGAATTTTGATTATTCAGTGAGCAAAGATGACCATATTTGGAATTGTGGTGAGGGAACTAATGGTTCTGTTCATAGCAGGTTCAAGCCAGTAGGAGATGGTGGTGTTGCTTTCTCCAATCATGGTGGTGGTGGTTTTAGTTCCTTTATGCAAGGTAATAATAGTCAATATAAAACTACTAGTTCAGAAAACCATTCATTTTTTCCTTCAGAATTGCCTGCTAGACCAAGGTTTGAAACTCAGTCTGGAGACTCAAGAGGAAGGAATTCTGAGAATCTGAGAGTTTTGGAAGGTTTTGATGGTGGGATGGTAAGGAAGGTTTCTAGGCCAGAGAGAATAATCAGAGAGATTGTTCATGAATCTGTACCTGCTATGGCAGTGACAATTCAGGAACTTACTGATGAAGTCATAGCATCAATGAAGGAATACTTGAAGATTCTCATGGAGAAGCCTGAGAAGAAAGAGGAATTGGTGAGCCTCCAAAAAAGGCTTGAGAGAAGATCTGATCTTACCAAGGAGAGTCTTTCAAAGTGCCAAAAGGTCCAATTAGAGGTTCTAGTTGCTGTCAAGATCGGGCACGCGAGCTTCTTAACCAGTAAAGCTAACTTATCTGAGATGGTAGATATTTTTATGTATAAGAGATGTAGAAATGTGAACTGCAAGAGTGTGCTTCCTGTTGATGACTGTGAGTGCAAGATTTGCTCCGGGAATAAGGGCTTTTGTAGTTCTTGCATGTGTCCTGTATGTTTGAACTTCGATTGTGCTAGCAACACTTGTAGTTGGATTGGTTGTGACGTTTGCTCCCATTGGTGCCATGCCACTTGTGGCATTCAAAGGAATCTCATCAAGCCTGGGCCTAGCTTGAAGGGACCTTCGGGTACCTCAGAGGTGCAGTTCCATTGTATTGGCTGTGGACATGCTTCGGAAATGTTTGGGTTCGTTAAAGATGTGTTCTTGTGTTGTGCAAAGGATTGGGGTATTGAAACCTTGATGAAAGAGCTTGACTGTGTACGGAGGATTTTCAGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACCGATGATATGATGTTAAAGCTTCAAACTAAGATGGTTTCTCCTTCGGATGCCTGCAGCTATATTCTACAATTTTTCAGTTATGCGGATAGCATACCCGACTTTCCTCCTTCCAGTATATCTTCGAAGGATTTGGCAACATCACAAGCTAACCATTCAAAGGAAACACCATCTCTTCCAAAATCTAGTTCTCAAATACCAAAATATCCGTATGACATGAGCTATTCTAGGTCACATTCAGATGCTCATGCCATGTCAAATAATATTCATCAGAAAGACCTCCAAGCTTCCCTCTTAAGTGAACGAAAAGCTGAGGCTGATTTCCATTTGTCGGCTTTATTAAGGAAAGGCGGAGTGGAAAGCTTGGAGAGCGTCGTGCGGATAAAGGAGGCAGAGACCAGAATGTTCCAAACCAAGGCAGATGAAGCGAAGCGAGAGGCAGAAGGATTCCAGAGGATGATCAGAACAAAGACTGCACAGATGGAAGAAGAATATGCTGAAAAGCTTGGCAAGCTGTGTTTGCATGAGACCGAGGAAACGCAAAGGAAGAAATTAGAGGAACTGAAAGTCTTGGAAAATTCTCATTATGATTACTATAAAATGAAAATGAGAATGCAAGATGAGATTGCTGGTTTGTTGGAGAGAATGGAGGCGACAAAGCGGCATTGGGTTTAA 2424 0.4113 MLPNGVDQDGEKSRSKLSRHNFEPIKEYPDEKGVEFLRDSEMGVDKILQSKPTTTKFDGSSSGFQELTLSYLCDNTKLSLAEREKRLLNYSMEKVSHKGKEVVGFSENSNLDGKWVERDFLSLSESRENSSKRSIEEVEKESNREKKPKLETLNLSLALPDVSLSLTASNALQNGAVADQQSLRPNPTRPSTTTHTSFSNDYTTPSLSYSYSHQFSHNPSCSLTHNSTENFDYSVSKDDHIWNCGEGTNGSVHSRFKPVGDGGVAFSNHGGGGFSSFMQGNNSQYKTTSSENHSFFPSELPARPRFETQSGDSRGRNSENLRVLEGFDGGMVRKVSRPERIIREIVHESVPAMAVTIQELTDEVIASMKEYLKILMEKPEKKEELVSLQKRLERRSDLTKESLSKCQKVQLEVLVAVKIGHASFLTSKANLSEMVDIFMYKRCRNVNCKSVLPVDDCECKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHASEMFGFVKDVFLCCAKDWGIETLMKELDCVRRIFRGSEDRKGKELHVKTDDMMLKLQTKMVSPSDACSYILQFFSYADSIPDFPPSSISSKDLATSQANHSKETPSLPKSSSQIPKYPYDMSYSRSHSDAHAMSNNIHQKDLQASLLSERKAEADFHLSALLRKGGVESLESVVRIKEAETRMFQTKADEAKREAEGFQRMIRTKTAQMEEEYAEKLGKLCLHETEETQRKKLEELKVLENSHYDYYKMKMRMQDEIAGLLERMEATKRHWV* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0402 807 Coils Coil 757 777 - -
Lan12g0402 807 Coils Coil 785 805 - -
Lan12g0402 807 MobiDBLite consensus disorder prediction 176 200 - -
Lan12g0402 807 MobiDBLite consensus disorder prediction 9 26 - -
Lan12g0402 807 Pfam Coiled-coil region of Oberon 672 796 IPR032535 -
Lan12g0402 807 CDD PHD_OBE1_like 473 532 - -
Lan12g0402 807 Coils Coil 723 743 - -
Lan12g0402 807 MobiDBLite consensus disorder prediction 277 319 - -
Lan12g0402 807 MobiDBLite consensus disorder prediction 1 26 - -
Lan12g0402 807 PANTHER PROTEIN OBERON 3 40 807 - -
Lan12g0402 807 MobiDBLite consensus disorder prediction 623 650 - -
Lan12g0402 807 MobiDBLite consensus disorder prediction 126 147 - -
Lan12g0402 807 MobiDBLite consensus disorder prediction 277 296 - -
Lan12g0402 807 Pfam PHD - plant homeodomain finger protein 443 567 IPR032881 -
Lan12g0402 807 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 40 807 IPR004082 -
Lan12g0402 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 356 378 IPR004082 -
Lan12g0402 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 395 410 IPR004082 -
Lan12g0402 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 434 455 IPR004082 -
Lan12g0402 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 480 500 IPR004082 -
Lan12g0402 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 553 572 IPR004082 -
Lan12g0402 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 703 723 IPR004082 -
Lan12g0402 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 742 764 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0402 Lan-Chr12 9541041 9544532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0402 365 572 PHD Gene Family AT5G57380 22.727 6.87e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0402 - - gmx:100820216 1303.12