Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0386 ATGCTAGACAAAAACAACAACAACAACAACAACACTGTTTTTTCTGGTGCACCATCTTCTTCTGATGCACCCTTTACATTATCTGAAAATGGTGTTTCTAACAAAAGAAAAAGAAGACCAGCTGGCACACCAGATCCAGATGCTGAGGTTGTGTCTCTCTCACCAAAGACCTTGTTAGAATCTGATAGATATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGAGACCAGAATCTTCAAATGCATAGAAGGAGACATAAGGTGCCATGGAAGTTGTTGAAAAGAGAAACACAAGGATTGAAAAAGAAGGTTTTTGTGTGTCCAGAACCAAGTTGTTTGCACCATGATCCTTGTCATGCCCTTGGTGACCTTGTTGGAATAAAGAAACACTTTAGAAGGAAGCACAGTAATCATAAGCAGTGGGTTTGTGACAAGTGCTCCAAAGGGTATGCAGTTCAATCTGATTATAAAGCACACATCAAAATTTGTGGCACCAGAGGCCATTCATGTGATTGTGGCCGTGTGTTTTCCAGGGTTGAGAGTTTCATAGAACATCAAGATTCCTGCACTATCAGGCAGCACAGGCCAGAGTTACAAGCACTACAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCTAGTGAAGCAAATTATAGTATAGCCCCTACCAAATTACAAGGACTAAGATTACCAAAATCAGTTGAAAAAGTAGATGCTTTATTAACTTCAGAGATACACAATAAGCCTAGCACCTTAGATCAGATGCATAACTTAGAACTTCAGCTCTTACCTTCTTCAACAAACTCTCAAGAAAGAAGAAATTCAAGTGATGTAAACTATGAGACTCATTTGAAACTTTCAATAGGTTCATGCAGTACTAATGACAAAGGGAGTGAGTCAAATCAGCTGCCAAGTTCACAAACACATAAGAATGTGAATGAGATTACCACAATGGAAGTAGCAAGGTTGAAAGAGTTTGCAAATGAGGAGTTAAAATTGGCAATGGTAGAAAAGGCTTATGCTGAAGAGGCTAGAAGAGAAGCTAAAAGACTAATTGAGATAGCTGAACTTGAGTTTGAGAATGCTCAAAGGATAAGGAAACAAGCACAAAGTGAGCTTGGAAAAGCTGAAGCTTTGAGAAACCAAGCTAGCAAGAAGATGAACTCTACTGTTATGGAAATAACATGCCAAGCTTGCAAGCAAAAGTTCCAAACTTCTACCATTCATGGTGTTCCATCAGAAGAGACATCCATTGTAATGAATAGTTATATGTCCTCAGCTACCACAGAAGGATAA 1305 0.3939 MLDKNNNNNNNTVFSGAPSSSDAPFTLSENGVSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGLKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKICGTRGHSCDCGRVFSRVESFIEHQDSCTIRQHRPELQALQPACSSRTASSTSPSSEANYSIAPTKLQGLRLPKSVEKVDALLTSEIHNKPSTLDQMHNLELQLLPSSTNSQERRNSSDVNYETHLKLSIGSCSTNDKGSESNQLPSSQTHKNVNEITTMEVARLKEFANEELKLAMVEKAYAEEARREAKRLIEIAELEFENAQRIRKQAQSELGKAEALRNQASKKMNSTVMEITCQACKQKFQTSTIHGVPSEETSIVMNSYMSSATTEG* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0386 434 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Lan12g0386 434 Gene3D Classic Zinc Finger 126 204 - -
Lan12g0386 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lan12g0386 434 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 434 - -
Lan12g0386 434 Gene3D Classic Zinc Finger 42 107 - -
Lan12g0386 434 MobiDBLite consensus disorder prediction 1 50 - -
Lan12g0386 434 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lan12g0386 434 MobiDBLite consensus disorder prediction 293 315 - -
Lan12g0386 434 MobiDBLite consensus disorder prediction 1 31 - -
Lan12g0386 434 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Lan12g0386 434 Coils Coil 341 389 - -
Lan12g0386 434 SMART c2h2final6 141 168 IPR013087 -
Lan12g0386 434 SMART c2h2final6 105 135 IPR013087 -
Lan12g0386 434 SMART c2h2final6 64 86 IPR013087 -
Lan12g0386 434 MobiDBLite consensus disorder prediction 203 223 - -
Lan12g0386 434 PANTHER OS03G0310200 PROTEIN 1 434 IPR039288 GO:0009630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0386 Lan-Chr12 9139960 9142734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0386 6 434 C2H2 Transcription Factor Family AT2G01940 54.825 3.13e-150 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan12g0386 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0386 K25871 - gmx:100791007 610.527