Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0377 ATGGTACCCCAACAATCCCAACCTCAATCTCAATCTTCTGCACCTTCTGCACAAGACGAGGCTCTAAAGAGGAACACCGATTGTGTCTACTTTCTTGCATCTCCTCTTACATGCAAAAAGGGAAATGAGTGTGAGTACCGCCATAGCGAGTATGCTCGGGTTAATCCTAGAGATTGCTGGTATTGGTTGAATGGGAATTGTTTGAATCCCAAATGCTCCTTCCGTCATCCGCCGCTTGATGGCCTGATAGGAACACCGCCAGCAACTTCTTCTGGGCCATCTCTGCCATCTGTGCCACTGTTACAGCATCCAACACCATCTGCAACACATGCACCATATAGTTCTAGTAAACCAGCTGTTCCATGCATTTTCTTCCAAAAAGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCCATTCCTAATACAGGTAATAAAGTAGTTACACAGGCCCCGATGAATAGCCAAGGAACTGAGGCTCAAAATTTTAAGAAGCCATTTGGTGGCATTGAAAAGAATACGCAGGAAAGGAAATTTTCCCATGGGAATGTTACAAAGCCAGTTGGAGGCCTTGAAGTTAAACCTTTCCAAAAAGTTGAAACTGCTCCACAAAAGAAATTTTTTGAGTTGAAGAAGCATGTGCCACCGCCATCTGCTGGATTTGAGGAGGAGGCTTCAATATTTAATGTAACAAGTACTCCACCGGTCATCAATGACCCGACTGTAGTCCGGTCTAGTCGTTTGCATCAAGCTTATGTTCCAGATGATAATAGCTTCCACAATGGTAAGGACAGTGATGAGTTTCTGAGAGAATCCTCTCCTGGGTTTGATGTTCTTGTAGATGATGAACTTAGGAATTCTGATTACTATCACGGGGAAGATGACTTTGGAAATACAAGAGGTCAAGATGAAAGGAACTTGGACTCTCTGAATGAGTATGATCTAGGACATTCTGCTGATTATAGTTTAGCGGCTGATATTGAGAGAGATAGATTTCGTGTGCCCCAAGGTTATGACTCATATGATCACACGCAAGAGACATACATGTGGGAACAACACAGGAAGCCATCAGCCCATTTAGAAAGAAGGCCTCACCGCAGATCTGACAGTCCTAACAATGCTGAGGTCTCAGATCTCCGACTTCATATATCCAAGCGCAGGAAGGGTAATGGTTTGAAATCTGTTGTCGCACATGATTATGCTCTTGAAAGTCGTGACGAGGAACGCAGTCAACGACACTTTCCCAGGATGGATTCACTCCAGTTACCTTCGAATGAGAGCTCCATCAGTAATCGCTTCCGAGGAAGAATTAATCTTCCAGTAAATGGTGGTGATGTTAACCAAGAGAGGGAATCAGACAGAGGAAGAATTGGGAGCAGATTGTCATCTGGAAGGTTACCAGCCCCTCATCAAGGAAGGTTTCAAGATAGAATTAGAGGAAGGGTGCAACATGGTGAGAGGGGGAACTTCAGGCAATCATTGCAGGGGAGAGAACTAATGGGGGACAGAACTAATGATTTTTATGCACCAAAACGTCTTTCCGAACTTAAAAATGGGAGGAACAGTGAAAATAGGGAGCAACTCTTTCTGGGAAAGAGAAAAGGTTTAAGGGATCACCAACAATCTGATGATGATTTTCAGTTTGATGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAGAGAGGAGTTGGAGCTGGTGCAGCCTCCCAGAGTGGCAATTCATCCGAGAATAAGAATATTGAAATTACCAATAACTCAGATCATACATCTCTCGCAAGCACACAAAATGGAGCATTGTTTGAGACCGTGGAGAATGTCAAGAATCATGAAGAAGTATCAAAGGCTGAGGTCACTGATGCAAGTCATGGTCAATCATCTGTAGAAGGACTGATCTATGATGAAGCCGCAGAGGATCAGAAATATGAAGGTGATGATCAAATTGATGGAGAATATGATTATGATCAAGTTGATGAGGGGGACTACGAGTATGAGCAAGTTGATGAAGGTGAAAATCCAGAGCAAGAATACATGGATGAAGAAGAAGACGGGGATGACTTTGCTAAGAAGATTGGTGTCGTGCTTACATAA 2103 0.4346 MVPQQSQPQSQSSAPSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLIGTPPATSSGPSLPSVPLLQHPTPSATHAPYSSSKPAVPCIFFQKGLCLKGDRCAFLHGPIPNTGNKVVTQAPMNSQGTEAQNFKKPFGGIEKNTQERKFSHGNVTKPVGGLEVKPFQKVETAPQKKFFELKKHVPPPSAGFEEEASIFNVTSTPPVINDPTVVRSSRLHQAYVPDDNSFHNGKDSDEFLRESSPGFDVLVDDELRNSDYYHGEDDFGNTRGQDERNLDSLNEYDLGHSADYSLAADIERDRFRVPQGYDSYDHTQETYMWEQHRKPSAHLERRPHRRSDSPNNAEVSDLRLHISKRRKGNGLKSVVAHDYALESRDEERSQRHFPRMDSLQLPSNESSISNRFRGRINLPVNGGDVNQERESDRGRIGSRLSSGRLPAPHQGRFQDRIRGRVQHGERGNFRQSLQGRELMGDRTNDFYAPKRLSELKNGRNSENREQLFLGKRKGLRDHQQSDDDFQFDGPKPLSEILKEKKRGVGAGAASQSGNSSENKNIEITNNSDHTSLASTQNGALFETVENVKNHEEVSKAEVTDASHGQSSVEGLIYDEAAEDQKYEGDDQIDGEYDYDQVDEGDYEYEQVDEGENPEQEYMDEEEDGDDFAKKIGVVLT* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0377 700 MobiDBLite consensus disorder prediction 572 596 - -
Lan12g0377 700 MobiDBLite consensus disorder prediction 670 690 - -
Lan12g0377 700 ProSiteProfiles Zinc finger C3H1-type profile. 53 79 IPR000571 GO:0046872
Lan12g0377 700 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Lan12g0377 700 MobiDBLite consensus disorder prediction 535 596 - -
Lan12g0377 700 Pfam Zinc-finger containing family 23 77 IPR041686 -
Lan12g0377 700 ProSiteProfiles Zinc finger C3H1-type profile. 22 51 IPR000571 GO:0046872
Lan12g0377 700 MobiDBLite consensus disorder prediction 670 687 - -
Lan12g0377 700 MobiDBLite consensus disorder prediction 438 474 - -
Lan12g0377 700 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 5 699 - -
Lan12g0377 700 Pfam RNA-binding, Nab2-type zinc finger 121 141 - -
Lan12g0377 700 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 5 699 - -
Lan12g0377 700 Gene3D - 13 79 - -
Lan12g0377 700 Gene3D - 108 189 - -
Lan12g0377 700 MobiDBLite consensus disorder prediction 352 380 - -
Lan12g0377 700 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Lan12g0377 700 MobiDBLite consensus disorder prediction 535 566 - -
Lan12g0377 700 SMART c3hfinal6 117 142 IPR000571 GO:0046872
Lan12g0377 700 SMART c3hfinal6 23 50 IPR000571 GO:0046872
Lan12g0377 700 SMART c3hfinal6 55 78 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0377 Lan-Chr12 8946939 8950286 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan12g0377 zf-CCCH_3 6.7e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0377 - - lang:109359705 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0377 12 8946939 8950286 Lan1g1650 1 28645146 28648653 LSH
Lan12g0377 12 8946939 8950286 Lan1g0825 1 19022411 19025999 LSH