Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0362 ATGGGCACTGTGGGTGACACTAGCAATTCTGGTTACACAAAATGTGCTGAACAAGTTCAGTGTTTGCCAAGTGAAACTAATAGTAATGGGGTGGAAGTTGCAAATGGGAATGGTTTTGCTGAAGAGGTTCAGCACTTCAAAAGTGGAGCCTTTAATAATGGGGTAGCAGTTTCAGATGTAAATGATGTTACTCAAGAGGCTTCATGCTTTAAAAGTGAAGCCATTGATAATGGGGTAGCGGTTTTGGATGCGAATGATGTTATGGAAGAGGCCTTGTGTTTGAAAAATGAAGCCTTTAATGGTGGGATGACAATTGCAAATGGTAATGGTGTTACTGAAGATGCTTTGTGTTTGAAAAGTGAAGCCATTAATAACAGAGTAGCGGTTTCAGATGGGAATGATGTTATGGAAGAGGCTTTGCGTTTGAAAAGGGAAGCCTGTAATAATGGGGTGGCAATTGCTGATGGGAATGTTGTTACTGAAGAGGGTCTGCGCTTGCAAAGTGAAGCCATTAGTAACGCGGTTGCAGTTGCAGATGGTTTTGGTTCTGCTGATAGGGACTCCGGTGGACTTGAATGTTTACGTATTTATAAGAGGCGCAAGCGTGGAAAGTCTAGTTCAGATAACAAAGATGATAGCAGAGAATGTGTGGAAGCTGCAGGTCATCTAGAAGACCAGGAAACTCTTAAAATTGACAAAGATGGACAAGAACACTCTTCACAATTGGAGTGGTTGCCTCATAGAACACAAGGTGAATCTAATGGGCATGCAAATGTCTTGCATGATGGATGTTCTAGTAAAACACATGGCCATGGTGTGACTCAGACATGTCAGCGCGTGCTCTGTGATATTTTAACTTCTGAAAATTTTCGCTCATTATGGAAGGCTCTACTTGAAAATTTCGAAGGAATGAAGCCTAATAGTTTATTTGACTTCAATATCATGACCTCAAGGATGAGTGAGAAAGCTTATGAGCAATCACCTGCACTTTTCTTCTCAGATATGCAACAGGTTTGGCAAAAGCTTCAAGATACCGGTAACGAGATCGTTGCTCTAGCCAAGAGCCTCTCCGACATGTCAAGAACATCGTACCATGAGCTGTTCAACAACCAGGAATCTAATTCTTACATGAAACCAGCACAGACAGAAGAACATGCTACGAATAAAATTTGCAGTTGCAGGCATTGTGGAGACAAGACAGATGGCACAGACTGTTTGGTTTGTGATTCATGCGAGGAGATGTACCATGTCTCCTGTATTGAGCCTGCTGTGAAAGAAATACCGCACAAAAGCTGGTATTGTGCCAATTGTACTGCTAGAGGCATTGGATCTCCGCATGAGAATTGCATAGTATGTCAGAAGTTGAATGATGTGAAAACCGAGAACAATGTAGTTGGTGATGAAAGCTTCGCTATGAATGAGGAAATACTAAATGAATTGGAAGAGAATTCAATTTGCACCGATGATGATGGCATTGAAGTATCCATAGATGGGAAAAACACACCCAATTGCAAAATTTGTGGATATGATGTGGATGGTGAAAAAGTAAAAACGTGCGGTCACCCGGTTTGCCCCAATAAATACTACCATGTAAGTTGTTTGACAAGTAAGCAGTTAAAGTCATATAGCCACTGTTGGTACTGCCCTTCTTGTTTATGCCGAGTTTGCTTCACTGATCAAGATGATGATAAGATTGTTCTCTGTGATGGCTGTGACCATGCATACCACATCTATTGCATGAAACCTCCACGAACTTCTATTCCAAAAGGGAATTGGTTCTGTAAAAAATGTGATGCAGGAATCCAAGCAATACGGCGGGCAAAGAAGGCATACGAAAGTAACAAGCGGAGAAGAACCGAGGATGATGTTTCAAAGCCGAGTGTTAATCCTGAAAAGAAATGCAGCAACAAACACGCACGCCAATTGGAAAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTGAACCTTGAAGAGAACTTGGCTTGCAATCCGGTCTGA 2010 0.4184 MGTVGDTSNSGYTKCAEQVQCLPSETNSNGVEVANGNGFAEEVQHFKSGAFNNGVAVSDVNDVTQEASCFKSEAIDNGVAVLDANDVMEEALCLKNEAFNGGMTIANGNGVTEDALCLKSEAINNRVAVSDGNDVMEEALRLKREACNNGVAIADGNVVTEEGLRLQSEAISNAVAVADGFGSADRDSGGLECLRIYKRRKRGKSSSDNKDDSRECVEAAGHLEDQETLKIDKDGQEHSSQLEWLPHRTQGESNGHANVLHDGCSSKTHGHGVTQTCQRVLCDILTSENFRSLWKALLENFEGMKPNSLFDFNIMTSRMSEKAYEQSPALFFSDMQQVWQKLQDTGNEIVALAKSLSDMSRTSYHELFNNQESNSYMKPAQTEEHATNKICSCRHCGDKTDGTDCLVCDSCEEMYHVSCIEPAVKEIPHKSWYCANCTARGIGSPHENCIVCQKLNDVKTENNVVGDESFAMNEEILNELEENSICTDDDGIEVSIDGKNTPNCKICGYDVDGEKVKTCGHPVCPNKYYHVSCLTSKQLKSYSHCWYCPSCLCRVCFTDQDDDKIVLCDGCDHAYHIYCMKPPRTSIPKGNWFCKKCDAGIQAIRRAKKAYESNKRRRTEDDVSKPSVNPEKKCSNKHARQLEKGGGMDMLLTAANTLNLEENLACNPV* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0362 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 603 IPR013083 -
Lan12g0362 669 ProSiteProfiles Zinc finger PHD-type profile. 390 440 IPR019787 -
Lan12g0362 669 ProSiteProfiles Zinc finger PHD-type profile. 550 600 IPR019787 -
Lan12g0362 669 PANTHER HISTONE ACETYLTRANSFERASE 204 662 - -
Lan12g0362 669 PANTHER D4, ISOFORM A 204 662 - -
Lan12g0362 669 Pfam PHD-finger 393 439 IPR019787 -
Lan12g0362 669 Pfam PHD-finger 553 598 IPR019787 -
Lan12g0362 669 Gene3D - 295 440 - -
Lan12g0362 669 SUPERFAMILY FYVE/PHD zinc finger 372 439 IPR011011 -
Lan12g0362 669 SUPERFAMILY FYVE/PHD zinc finger 552 604 IPR011011 -
Lan12g0362 669 MobiDBLite consensus disorder prediction 610 638 - -
Lan12g0362 669 SMART PHD_3 503 552 IPR001965 -
Lan12g0362 669 SMART PHD_3 555 598 IPR001965 -
Lan12g0362 669 SMART PHD_3 392 438 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0362 Lan-Chr12 8625807 8632999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0362 552 618 C2H2 Transcription Factor Family AT3G01460 50.725 1.59e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan12g0362 PHD 7e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0362 - - gmx:100795906 689.878