Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0346 ATGGCTGAATCTCACTCTCCCACACCAACCCTTAGCCCCACCATAAGCACACTACATGATAATTATAACCACCACCCTCAAGAACATTCAGGCTTTGATTGGATGGTTCTTGTGGCAGCCATATTATGTGCCTTTCTTTGTGCTCTTGGCCTTAACACTATGTTACAATGTGTATTTCAATGTGCTAGTCGTGTATTCACTGAACCTATGCAATGGATTGCATCTAGAAGGCTTAATTCTGGGCTTAAGAAGAAAGAAATGGTAGCTTTGCCAACATCAACTTATAGCAATTCTGGGTCTCCATCTTCATCATCACCCTCTAATTGTGCTATTTGTTTAGCTGAATTCTTTGATGGGGACCAAATAAGGTTCCTTCCAATGTGCAATCACTCTTTCCATGTGGTTTGCATTGACAAGTGGTTGCTCTCTCATTCTTCTTGTCCTACTTGTAGGCACCTTATCAGGTCTAATGATTTACCTCACTCCATTCTACCAGCATGA 501 0.4152 MAESHSPTPTLSPTISTLHDNYNHHPQEHSGFDWMVLVAAILCAFLCALGLNTMLQCVFQCASRVFTEPMQWIASRRLNSGLKKKEMVALPTSTYSNSGSPSSSSPSNCAICLAEFFDGDQIRFLPMCNHSFHVVCIDKWLLSHSSCPTCRHLIRSNDLPHSILPA* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0346 166 PANTHER OS06G0666500 PROTEIN 12 156 - -
Lan12g0346 166 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 12 156 - -
Lan12g0346 166 SUPERFAMILY RING/U-box 108 156 - -
Lan12g0346 166 Pfam Ring finger domain 108 151 IPR001841 -
Lan12g0346 166 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lan12g0346 166 SMART ring_2 109 150 IPR001841 -
Lan12g0346 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0346 Lan-Chr12 8325722 8326330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0346 1 154 C3H Transcription Factor Family AT1G20823 39.877 5.30e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0346 - - gmx:100779286 215.698