Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0339 ATGTCTCGTAGCATTCGAAATCTACAACTAACTTCCACCGTCGGCAAAGCCTCCCTCGCCGCCGGCGACAGCTCCGACAACCTGGAGGACGTGCGGTTGTTAGATTCGTACGATGAGGTCGATGTTTCTAGCACCGATGGAACGAAGCGAATTCAAGTCAGAATCACCGGCATGACCTGCGCTGCGTGCTCTAACTCCGTTGAAACGGCACTCAAATCCGTTAACGGCGTCGTTTCTGCCTCCGTTGCACTTCTTCAAAACAAAGCTGACGTCGTTTTCAATTCAAATCATGTCAAGGAAGAAGAAATTAAGAATGCGATTGAAGATGCAGGTTTCGAAGCTGAGATTTTACCGGATTCGAAACCGAACAACACGGTCAAAACGAAGCCGCATGAATCCACCCTGGTTGGTCAGTTCACGATCTCGGGAATGACGTGTGCGGCGTGCGTGAATTCTGTGGAAGGAATTCTTCGGAACCTTACCGGTGTGAAAAAAGCTGTGGTGGCTTTGGCTACTTCATTAGGTGAAGTCGAATATGATCCAAATGTGATTGGTAAAGATGAAATTGTAACCGCCATTGAAGATGCCGGTTTCGAGGCTTCATTTGTGCAGAGTAGTGAACAGGATAAGGTGGTTTTAGGGGTTGATGGTGTTTATAGTTTGGTTGATGCTCAGGTTTTGGAAGGGATGCTCACTAGCAGCATCAAAGGGGTGAGGCAGTTTCGATTTGATCCGATATCGAATGAACTTGATGTTGTGTTTGATCCTGAGCTTATCAACGCTAGATCATTGGTTGACGGAATTGAGATGGGAAGTAATGGCAAGTTTAAGTTACATGTTAGAAACCCCTATGCTAGAATGGCTTCTAAAGATGGTGTAGAGACCTCGAATATGTTTCGGCTCTTTCTTTCCAGTCTGTTTCTCAGTATTCCTCTATTCTTCATGGGGGTTATTTGTCCTCACATTCCATTGATATACTCCTTATTAATTTGGAGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAGTGGGCATTGGTGAGTGTCATCCAATTTGTGATTGGGAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACAGCCTCCTATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCTCTCACTGGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAAACCCTTGCCAAGGGAAAGACATCTGATGCCATTAAGAAGTTAGTAGAACTTACTCCTGCAACAGCTTTATTGGTTGTCAAAGATAAAGGTGGTAAGTCTATTGGAGAAAGAGAAATAGATTCCTTGCTCATTCAACCTGGCGATACACTAAAGGTTCTTCCTGGAACAAAGATCCCTGCTGATGGTATTGTCACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTGACTGGTGAATCGATACCTGTTTCAAAGGAGGCCAACACATCTGTTATTGGAGGTACTATCAATTTGCATGGTGCCCTTCACATTCAAGCTACCAAAGTTGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAAATGTCCAAAGCTCCCATCCAAAAGTTTGCCGATTTTGTAGCAAGCATATTTGTTCCCACAGTTGTGGCATTGTCCTTATTGACATTATTGTGCTGGTATATTGCTGGGGCTCTTGGAAGTTATCCAGAAGAATGGCTACCGGAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGTCCCTGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCTAACAATGGTGTTTTGATTAAAGGAGGAGATGCCTTGGAAAGAGCTCAAATGGTGAAGTATGTTGTGTTTGATAAAACAGGCACTCTGACTCAGGGGAAAGCCACTGTTACTACTGCCAAGGTGTTCACTGGAATGGACCGTGGAGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCAAAAGCAATATTGCAATATGCACGACATTTTCATTTCTTTGATGAATCCTCTCCAAACAGTGGTACCCAGAGTGATGCCAAGGAGTTGAAGTCAGGGTGGCTTTATGATGCCTCAGACTTCTCTGCTCTTCCCGGAAGAGGTGTCCGATGCTTTATAGATGGGAAACTTATTTTGGTTGGTAACAGGAAGCTGATGGTGGAAAGTGGCATAAATATTTCTATGGAAGTGGAAAATTTTGTGGTAGAGCTCGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATGATGATGTATTAACGGGAGCCTTAGGGGTTGCAGACCCACTAAAGAGAGAAGCTGCTGTTGTTATAGAGGGCCTCCAGAAAATGGGAGTCACACCTATTATGGTTACTGGAGATAACTGGAGAACAGCTCGAGCTGTTGCAAAGGAGGTTGGCATCCAAGATGTTCGGGCAGAGGTTATGCCCGCAGGAAAGGCTGATGTTATCCGTTCACTTCAAAACGATGGGAGTGTAGTTGCAATGGTAGGTGATGGTATCAATGACTCTCCTGCGTTAGCTGCTGCAGATGTTGGTATGGCAATTGGAGCTGGGACAGATATTGCAATAGAAGCTGCTGACTATGTTCTGATGAGAGATAATTTGGAAGATGTGATCACAGCTATTGATCTTTCCAGGAAGACCTTTTCTCGGATTCGATTGAATTATGTATTTGCAATGGCCTACAATGTTGTTTCCATTCCAGTTGCTGCTGGGCTTTTATATCCTTCACTCGGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTATCGTCTGTAAGTGTTGTATGCTCTTCTTTACTTCTGAGAAGATATAGAAAACCCAAACTTACTACAATACTTGAAATAGTTGTAGATTAA 3018 0.4414 MSRSIRNLQLTSTVGKASLAAGDSSDNLEDVRLLDSYDEVDVSSTDGTKRIQVRITGMTCAACSNSVETALKSVNGVVSASVALLQNKADVVFNSNHVKEEEIKNAIEDAGFEAEILPDSKPNNTVKTKPHESTLVGQFTISGMTCAACVNSVEGILRNLTGVKKAVVALATSLGEVEYDPNVIGKDEIVTAIEDAGFEASFVQSSEQDKVVLGVDGVYSLVDAQVLEGMLTSSIKGVRQFRFDPISNELDVVFDPELINARSLVDGIEMGSNGKFKLHVRNPYARMASKDGVETSNMFRLFLSSLFLSIPLFFMGVICPHIPLIYSLLIWRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLETLAKGKTSDAIKKLVELTPATALLVVKDKGGKSIGEREIDSLLIQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESIPVSKEANTSVIGGTINLHGALHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADFVASIFVPTVVALSLLTLLCWYIAGALGSYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVVFDKTGTLTQGKATVTTAKVFTGMDRGEFLTLVASAEASSEHPLAKAILQYARHFHFFDESSPNSGTQSDAKELKSGWLYDASDFSALPGRGVRCFIDGKLILVGNRKLMVESGINISMEVENFVVELEESAKTGILVAYDDVLTGALGVADPLKREAAVVIEGLQKMGVTPIMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVIRSLQNDGSVVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRDNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVSIPVAAGLLYPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPKLTTILEIVVD* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0339 1005 Gene3D - 137 202 - -
Lan12g0339 1005 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Lan12g0339 1005 PRINTS P-type cation-transporting ATPase superfamily signature 659 673 - -
Lan12g0339 1005 PRINTS P-type cation-transporting ATPase superfamily signature 804 815 - -
Lan12g0339 1005 PRINTS P-type cation-transporting ATPase superfamily signature 826 836 - -
Lan12g0339 1005 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Lan12g0339 1005 PRINTS P-type cation-transporting ATPase superfamily signature 902 914 - -
Lan12g0339 1005 SUPERFAMILY HMA, heavy metal-associated domain 45 120 IPR036163 GO:0046872
Lan12g0339 1005 Pfam haloacid dehalogenase-like hydrolase 655 893 - -
Lan12g0339 1005 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 412 680 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g0339 1005 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 765 961 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g0339 1005 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 958 IPR023298 -
Lan12g0339 1005 CDD P-type_ATPase_Cu-like 300 975 - -
Lan12g0339 1005 TIGRFAM TIGR00003: copper ion binding protein 138 200 IPR006122 GO:0005507
Lan12g0339 1005 TIGRFAM TIGR00003: copper ion binding protein 51 114 IPR006122 GO:0005507
Lan12g0339 1005 Gene3D - 48 119 - -
Lan12g0339 1005 PANTHER HEAVY METAL P-TYPE ATPASE 11 998 - -
Lan12g0339 1005 ProSiteProfiles Heavy-metal-associated domain profile. 50 116 IPR006121 GO:0046872
Lan12g0339 1005 Pfam E1-E2 ATPase 440 638 - -
Lan12g0339 1005 PRINTS H+-transporting ATPase (proton pump) signature 851 867 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g0339 1005 PRINTS H+-transporting ATPase (proton pump) signature 879 895 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g0339 1005 PRINTS H+-transporting ATPase (proton pump) signature 910 935 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g0339 1005 Gene3D - 427 549 - -
Lan12g0339 1005 Gene3D - 670 812 IPR023299 GO:0000166
Lan12g0339 1005 SFLD p-type atpase 641 931 IPR044492 -
Lan12g0339 1005 ProSitePatterns E1-E2 ATPases phosphorylation site. 661 667 IPR018303 -
Lan12g0339 1005 CDD HMA 138 201 IPR006121 GO:0046872
Lan12g0339 1005 ProSitePatterns Heavy-metal-associated domain. 55 85 IPR017969 GO:0046872
Lan12g0339 1005 Gene3D - 650 929 IPR023214 -
Lan12g0339 1005 ProSitePatterns Heavy-metal-associated domain. 141 170 IPR017969 GO:0046872
Lan12g0339 1005 SUPERFAMILY Calcium ATPase, transduction domain A 460 545 IPR008250 -
Lan12g0339 1005 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 373 988 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lan12g0339 1005 CDD HMA 52 115 IPR006121 GO:0046872
Lan12g0339 1005 SUPERFAMILY HAD-like 658 985 IPR036412 -
Lan12g0339 1005 PANTHER ATP7, ISOFORM B 11 998 - -
Lan12g0339 1005 SUPERFAMILY HMA, heavy metal-associated domain 134 206 IPR036163 GO:0046872
Lan12g0339 1005 SFLD C1.7: P-type atpase like 641 931 - -
Lan12g0339 1005 Pfam Heavy-metal-associated domain 53 113 IPR006121 GO:0046872
Lan12g0339 1005 Pfam Heavy-metal-associated domain 139 199 IPR006121 GO:0046872
Lan12g0339 1005 ProSiteProfiles Heavy-metal-associated domain profile. 136 202 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0339 Lan-Chr12 8208665 8214438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0339 1 1005 Primary Pumps ATPases AT5G44790 75.196 0.0 1519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0339 K17686 - gmx:100798164 1657.88