Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0314 ATGGCGAAGAACAAGTCTCTATCCTCTTCTACTTCTTCTTCTTCAACCTCTGCTCAAGCCTCCACAATCACAACACGCTCTTCTTCTGCCACTCCCAGCAAACTAGTATTGAAGATTAAAACAAATGGGGGAATGAAGAGATCGATGCAGCAGACTAATTCCAGAGCGAAACCTAAAGCTACTCAAAAGAAGAGCAAACAAAAGATTGATGCTAAGAAACCAAAGAAACCACCCACCGCTTTCTTCTACTTCTTGGAAGATTTTCGCAAAGGGTTTCAAGATCAAAATCCAGATGTCAAGTCAATGCGTGATGTTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACCTATGATGAGAAAGTTCAATATTATGATATAGCAACAGAAAAACGTGCTGAGTTTGATAGAGCAATGGCAGAATATGAGAAGAAAATGGAAAGTGGTGAATACGATGAAAGTAATGATGAATCAGAGCTTGATGAGTAA 489 0.3988 MAKNKSLSSSTSSSSTSAQASTITTRSSSATPSKLVLKIKTNGGMKRSMQQTNSRAKPKATQKKSKQKIDAKKPKKPPTAFFYFLEDFRKGFQDQNPDVKSMRDVGKACGEKWKTMTYDEKVQYYDIATEKRAEFDRAMAEYEKKMESGEYDESNDESELDE* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0314 162 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 74 143 IPR009071 -
Lan12g0314 162 SUPERFAMILY HMG-box 62 151 IPR036910 -
Lan12g0314 162 CDD HMGB-UBF_HMG-box 74 140 - -
Lan12g0314 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 161 - -
Lan12g0314 162 MobiDBLite consensus disorder prediction 1 36 - -
Lan12g0314 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 1 161 - -
Lan12g0314 162 Pfam HMG (high mobility group) box 74 143 IPR009071 -
Lan12g0314 162 Gene3D High mobility group box domain 57 159 IPR036910 -
Lan12g0314 162 SMART hmgende2 73 144 IPR009071 -
Lan12g0314 162 MobiDBLite consensus disorder prediction 1 76 - -
Lan12g0314 162 Coils Coil 125 145 - -
Lan12g0314 162 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0314 Lan-Chr12 7744882 7755174 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan12g0314 HMG_box 1.6e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0314 - - lang:109362761 261.922