Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0298 ATGGAAAAAGAGCCTTTACTACCATATTCAAGTCCAAAATTAAGGCCTCCATTCCCACCAAACCTTTTTCCATTACCAGAAAATGATGAAATCAATCTCCCAGTGACCCCAAAGGAATTAAAAGATAGACTCATATTTGGTCCTTCACCAAAAGACCCTTCTTCACCTTTGGTTGAAGCCTTAACACTTTCATTCAAACCTTCTTCTTCAAATCAGGACCTTTTATTTGATTCACAACAACAACAACAATTAGCTTCATGGCTTATTGATCCTGATTATGCACACCGCAAAACAAATCTTCACCGGTCAAAAACCGCGCCAGCTATTGCTGTTGTAAGTGATTTCAGTCGCCATTCATCTGAGGAAAGACCCAAGTTTGGTTCTCAGAGCATTGTTCACCAAGCTTGTATTTTTCTTGTTCTATATTTATCATTAGGGGTGGTGATTTATTGGTACAATCGTCATAATTTTTCATCTAATGAGACTCATCCTATAGTGGATGGTTTGTATTTTTGCATAGTCACAATGTGCACAATAGGTTATGGTGACATTACTCCAAATAGTACAACAACCAAGCTTTTCGCGATTTTGTTCGTGTTGGTGGGTTTCGGTTTTATAGACATATTGTTAAGTGGGATGGTAAGTTATGTCCTTGATTTGCAAGAGAATCATTTGTTGCGGGCAGTGAAGGGTAAGGGTGAGAAGGATGGGAGGTCATATTTAGTTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCCTTGGCATTGGGGGTCGTCGTCCTTTGTATTGGATTCGGTGTCGGGGTACTGCATTTTGTCGAAAAGCTTGATTGGTTGGATTCGTTTTATCTTTCAGTTATGTCAGTTACAACAGTTGGGTACGGTGATAAAGCATTCAAGACTGTGCATGGTCGTATCTTTGCTGCAATTTGGTTGCTTGTGTCAACGCTTACAGTGGCCCGAGCATTCCTCTATTTGGCTGAGGCGAGAGTTGATAAGCGGCATAGGAGGATGGCAAAGTGGATCCTTGGTCAGGATATGACTGTTGCTGAGTTTCTTGCTGCAGACATTGACAACAATGGCTTTGTGAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGTTGGGTAAAGTATCAGATAAGGACATCATGCAGATTAGTGAGAAGTTTGACATATTAGATACTGGCAAATGCGGAAAGATAACACTTGCTGATCTCATGGAGAGTCATCATGGATGA 1251 0.4061 MEKEPLLPYSSPKLRPPFPPNLFPLPENDEINLPVTPKELKDRLIFGPSPKDPSSPLVEALTLSFKPSSSNQDLLFDSQQQQQLASWLIDPDYAHRKTNLHRSKTAPAIAVVSDFSRHSSEERPKFGSQSIVHQACIFLVLYLSLGVVIYWYNRHNFSSNETHPIVDGLYFCIVTMCTIGYGDITPNSTTTKLFAILFVLVGFGFIDILLSGMVSYVLDLQENHLLRAVKGKGEKDGRSYLVDVKKGRMRIRMKVALALGVVVLCIGFGVGVLHFVEKLDWLDSFYLSVMSVTTVGYGDKAFKTVHGRIFAAIWLLVSTLTVARAFLYLAEARVDKRHRRMAKWILGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKELGKVSDKDIMQISEKFDILDTGKCGKITLADLMESHHG* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0298 416 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 81 410 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lan12g0298 416 Gene3D - 129 229 - -
Lan12g0298 416 SUPERFAMILY Voltage-gated potassium channels 119 217 - -
Lan12g0298 416 MobiDBLite consensus disorder prediction 1 21 - -
Lan12g0298 416 SUPERFAMILY EF-hand 353 414 IPR011992 -
Lan12g0298 416 Pfam Ion channel 137 217 IPR013099 -
Lan12g0298 416 Pfam Ion channel 261 330 IPR013099 -
Lan12g0298 416 Gene3D - 239 350 - -
Lan12g0298 416 SUPERFAMILY Voltage-gated potassium channels 245 352 - -
Lan12g0298 416 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Lan12g0298 416 PANTHER TWO-PORE POTASSIUM CHANNEL 3 81 410 - -
Lan12g0298 416 PRINTS Two pore domain K+ channel signature 174 202 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lan12g0298 416 PRINTS Two pore domain K+ channel signature 293 302 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0298 Lan-Chr12 7022895 7029659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0298 4 416 Ion Channels AT4G18160 61.163 1.52e-175 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0298 K05389 - gmx:100804249 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0298 12 7022895 7029659 Lan1g0804 1 18735524 18737493 LSH