Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0297 ATGTCTAACTCTAACTCAAGGAGGAACATGGGTCGTCAAAAGATTGAGATGAAAAGGATAACCAAAGAGAGCAACCTTCAAGTCACATTTACCAAATGTTGCAATGGGCTTTTCAAAAAAGCCAATGAGCTTTGCACTATTTGTGATGCACAAGTTTCCCTCATTGTCTTCTCTCCTGCAAACAAGCTTTTCTCCTTTGGTGAATCTGGTGTTGATGAGCAGAATGAAAAGATTAGTCGTATCAATGAAGCTCTTGAGAGTGAGAAGAAATACTGTGAAGAGCTGGCTAAGCAAAGGAAAGAGGCACAAGAACAGTTCTGGTGGGTTTCTCCTATTCAGGAGATGAATGGAGACCAACTTGATAAATTCAAGTTGGCTCTTGAGAATCTGAAAAAGAATGTGCTTGGTGTTGTTGAAAAGCAAAATATTGCTGATGTTGATGTTGCTGATACTGATGTTTAA 462 0.3918 MSNSNSRRNMGRQKIEMKRITKESNLQVTFTKCCNGLFKKANELCTICDAQVSLIVFSPANKLFSFGESGVDEQNEKISRINEALESEKKYCEELAKQRKEAQEQFWWVSPIQEMNGDQLDKFKLALENLKKNVLGVVEKQNIADVDVADTDV* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0297 153 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Lan12g0297 153 Coils Coil 81 105 - -
Lan12g0297 153 PANTHER MADS BOX PROTEIN 9 70 - -
Lan12g0297 153 PANTHER MADS BOX PROTEIN 74 140 - -
Lan12g0297 153 Gene3D - 22 89 IPR036879 GO:0003677|GO:0046983
Lan12g0297 153 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Lan12g0297 153 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 9 70 - -
Lan12g0297 153 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 74 140 - -
Lan12g0297 153 SUPERFAMILY SRF-like 10 80 IPR036879 GO:0003677|GO:0046983
Lan12g0297 153 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Lan12g0297 153 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Lan12g0297 153 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Lan12g0297 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0297 Lan-Chr12 7005304 7005855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0297 9 153 Type I MADS-box Gene Family AT2G24840 39.205 1.05e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan12g0297 SRF-TF 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0297 - - lang:109361846 307.375