Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0296 ATGTCTAACTCAATCCCCAGCTCTTGTAACCCAATCCCTAGCTCTAGTAACCCAAAGAAGAATAAGGGTCGTAGAAGGATTGAGATGAAAATGATAGTCAAAGACATCAACCTACAAGTCACATTCTCCAAACACCGCATTGGGCTATTCAAGAAAACGAGCGAGCTTTGCACTCTTTGTAATGCAAAAGTTGGGCTAGTTGTCTTTTCTCCTGCAAACAAGGCTTTCTCTTTTGGTGACCCTAGTATTGATGTTATCGTAGACCGCTATCAAATGAGGGACCAACCACTGAACCTGGGCAACAGGCAATATCTTCAGGCTCACAGAAATGCTAATGTTCAGGAGCTTAATGATAAGATTAATCGGATCAATGAAGATCTTGAGATTGAGAAGAAGTCCAGTGAAGAGTTGGCTAAGCAAAGGAAAGAGGCACAAGAACTTTTCTGGTGGTGCATCTTCTTCCTACAACCCTTTGCCACCATAACCTCAGCCACCAACTCAGGAGTTTCAGGTGCAGCCGCCATCGCCACCTCAGCAGTTTCTTGGAAATCCACAACCACCACCTTGACAGTTTATGCATCCATAACCACCACCACCACAGTTTATGCATCCACAACCACCACCACCACAGTTTATGTATCCACCACCACCACCACATATGCTTCAGAACCAGTCCATGATGCTGCCAAATAA 693 0.4473 MSNSIPSSCNPIPSSSNPKKNKGRRRIEMKMIVKDINLQVTFSKHRIGLFKKTSELCTLCNAKVGLVVFSPANKAFSFGDPSIDVIVDRYQMRDQPLNLGNRQYLQAHRNANVQELNDKINRINEDLEIEKKSSEELAKQRKEAQELFWWCIFFLQPFATITSATNSGVSGAAAIATSAVSWKSTTTTLTVYASITTTTTVYASTTTTTTVYVSTTTTTYASEPVHDAAK* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0296 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 78 IPR002100 GO:0003677|GO:0046983
Lan12g0296 230 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 22 149 - -
Lan12g0296 230 Gene3D - 35 104 IPR036879 GO:0003677|GO:0046983
Lan12g0296 230 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Lan12g0296 230 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Lan12g0296 230 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Lan12g0296 230 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Lan12g0296 230 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Lan12g0296 230 PANTHER MADS BOX PROTEIN 22 149 - -
Lan12g0296 230 MobiDBLite consensus disorder prediction 1 26 - -
Lan12g0296 230 Coils Coil 110 147 - -
Lan12g0296 230 SUPERFAMILY SRF-like 23 93 IPR036879 GO:0003677|GO:0046983
Lan12g0296 230 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0296 Lan-Chr12 6975846 6976702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0296 19 150 Type I MADS-box Gene Family AT5G60440 49.265 2.64e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan12g0296 SRF-TF 7.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0296 - - lang:109339900 247.669