Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0295 ATGTCTAACTCAATCCCCAGCTCTAGTAACCCAACACCTAGCTCTAGTAACCCAAAGAAGAACAAGGGTCGTAGAAGGATTGAGATGAAAATCATAGCCAAAGACAAAAACCTACAAGTCACATTCTCCAAATGCCACACTAGGCTATTCAAAAAAGCGAGCGAGCTTTGGACTCTTTGTGATGCAAAATTTGGGCTAGTTGTCTTTTCTCCTGCAAACAAGGCTTTCTCCTTTGGCGACCCTAGTATTGATGTTGTCGTAGACCGCTATCAAATGAGGGACCAACCACTGACTGAGGCTCACAGAAATGCTAATTCGGCTCTTGAGAATCTTAAGAAGAATGTGCTTGGTGTTGTTGAAAAGCAGAATATTGATGAGGGTGCTTCTACTGTTGCTGCTGCTATCCCACCTCCTCCTCACTTTTTTACAAGAGGTGCATCTTCTTCAAACAACCCTTTGCCACCACCACCTCAGCCACCAACTCAGGAGTATCAGGTGCAGCCGCCACCGCCACCTCAACAGTTTATGCATCCCAACCACCACCTCAGTAGTTTATACAGCCACAAGCACTACCTCAGCAGTTTCCGATGTATCCACCACCACCACCATATATGCTTCAGAACCAGTCCATGA 633 0.4597 MSNSIPSSSNPTPSSSNPKKNKGRRRIEMKIIAKDKNLQVTFSKCHTRLFKKASELWTLCDAKFGLVVFSPANKAFSFGDPSIDVVVDRYQMRDQPLTEAHRNANSALENLKKNVLGVVEKQNIDEGASTVAAAIPPPPHFFTRGASSSNNPLPPPPQPPTQEYQVQPPPPPQQFMHPNHHLSSLYSHKHYLSSFRCIHHHHHICFRTSP* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0295 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 78 IPR002100 GO:0003677|GO:0046983
Lan12g0295 210 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Lan12g0295 210 MobiDBLite consensus disorder prediction 1 25 - -
Lan12g0295 210 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Lan12g0295 210 MobiDBLite consensus disorder prediction 150 176 - -
Lan12g0295 210 Gene3D - 35 115 IPR036879 GO:0003677|GO:0046983
Lan12g0295 210 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Lan12g0295 210 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Lan12g0295 210 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Lan12g0295 210 SUPERFAMILY SRF-like 23 93 IPR036879 GO:0003677|GO:0046983
Lan12g0295 210 MobiDBLite consensus disorder prediction 135 178 - -
Lan12g0295 210 PANTHER MADS BOX PROTEIN 22 117 - -
Lan12g0295 210 MobiDBLite consensus disorder prediction 1 18 - -
Lan12g0295 210 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 22 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0295 Lan-Chr12 6946208 6946998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0295 19 126 Type I MADS-box Gene Family AT5G60440 45.082 7.22e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan12g0295 SRF-TF 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0295 - - lang:109361844 332.413