LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan12g0294	ATGTCTAACTCAATCCCTAGCTCTAGTAACCCAAAGAAGAACCAGGGTCATAGAAGGATTGAGATGAAAAGGATAGCCAAAGACAACAACCTACAAGTCACATTCTCCAAACGCCACACTGGGCTATTCAAGAAAGCGAGCGAGCTTTGCACTCTTTGTGATGCAAAAGTTGGGCTAGTTGTCTTTTCTCCTGCAAACAAGGATTTCTCCTTTGGCAATCCTAGTATTGATGCTGTCGTAGACTACTATCAAATGAGGGACCAACCACTGAACCTGGGGAACACGCAATATCTTGAGGCTCACATAAATGCTAATGTTCAGGAGCTTAATGACAAGATTAACCGGATCAATGAAGATCTTGAGATTGAGAAGAAGTGCAGTGAAGAGTTGGCTAAGCAAAGGAAAGAGGCACAAGAACGTTTCTGGTGGGCTACTCCAATTGAAGAGTTCAATGGAGAACGACTTGATCAATTGAAGTCGGCTCTTGAGAATCTGAAGAAGAATGTGCTTGGTGTAGTTGAAAGGCAGAATATTGCTGAGGGTGCTGCTACTGTTGTTGCTTCTATCCCACCTCCTCCTCACTTTTTTACAGGTGTTGCATCTTCTTCAAACAACCCTTTTCCAACACCACCTCAGCCACCAACTCAGGAGTTTCAGGTGTAG	663	0.4389	MSNSIPSSSNPKKNQGHRRIEMKRIAKDNNLQVTFSKRHTGLFKKASELCTLCDAKVGLVVFSPANKDFSFGNPSIDAVVDYYQMRDQPLNLGNTQYLEAHINANVQELNDKINRINEDLEIEKKCSEELAKQRKEAQERFWWATPIEEFNGERLDQLKSALENLKKNVLGVVERQNIAEGAATVVASIPPPPHFFTGVASSSNNPFPTPPQPPTQEFQV*	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan12g0294	220	CDD	MADS_MEF2_like	16	84	IPR033896	GO:0000977\|GO:0045944
	Lan12g0294	220	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	24	71	IPR002100	GO:0003677\|GO:0046983
	Lan12g0294	220	MobiDBLite	consensus disorder prediction	206	220	-	-
	Lan12g0294	220	PRINTS	MADS domain signature	17	37	IPR002100	GO:0003677\|GO:0046983
	Lan12g0294	220	PRINTS	MADS domain signature	37	52	IPR002100	GO:0003677\|GO:0046983
	Lan12g0294	220	PRINTS	MADS domain signature	52	73	IPR002100	GO:0003677\|GO:0046983
	Lan12g0294	220	Gene3D	-	28	95	IPR036879	GO:0003677\|GO:0046983
	Lan12g0294	220	ProSiteProfiles	MADS-box domain profile.	15	75	IPR002100	GO:0003677\|GO:0046983
	Lan12g0294	220	SUPERFAMILY	SRF-like	16	86	IPR036879	GO:0003677\|GO:0046983
	Lan12g0294	220	PANTHER	MADS BOX PROTEIN	16	173	-	-
	Lan12g0294	220	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED	16	173	-	-
	Lan12g0294	220	Gene3D	-	96	188	-	-
	Lan12g0294	220	Coils	Coil	148	175	-	-
	Lan12g0294	220	Coils	Coil	99	140	-	-
	Lan12g0294	220	MobiDBLite	consensus disorder prediction	198	220	-	-
	Lan12g0294	220	SMART	madsneu2	15	74	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan12g0294	Lan-Chr12	6876322	6876984	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan12g0294	12	205	Type I MADS-box Gene Family	AT5G60440	43.939	7.68e-43	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lan12g0294		SRF-TF	4.5e-22	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan12g0294	-		-	lang:109361843	407.912