Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0293 ATGTCTAACTCAATCCCTAGCTCTAGTAACCCAAAGAAGAACAAGGGTCGTAGAAGGATTGAGATGAAAAGGATAGCCAAAGACAGCAACCTACAAGTCACATTCTCCAAACGCCGTACTGGGCTATTGAAGAAAGCGAGTGAGCTTTGCAGTCTTTGTGATGCAAAAGTTAGGCTAGTTGTCTTTTCTCCTGCAAACAAGGCTTTCTCCTTTGGCGACCCTAGTATTGATGTTGTCGTAGACGGCTATCAAATGAGGGACCAACCACTGAACCTGGGGAACATGCAATATCTCGAGGCTCATAGAAATGCTAATTTTCAGGAGCTTAATGATAAGATTAATCGGATCAATGAAGATATTGAGTTTGAGAAGAAGTGCAGTGAAGAGTTGGCTAAGGAAAGGAAAGAGGCACAAGAACGTTTCTGGTGGGCTGCTCCAATTGAAGAGATCAATGGAGAACGATAA 465 0.4301 MSNSIPSSSNPKKNKGRRRIEMKRIAKDSNLQVTFSKRRTGLLKKASELCSLCDAKVRLVVFSPANKAFSFGDPSIDVVVDGYQMRDQPLNLGNMQYLEAHRNANFQELNDKINRINEDIEFEKKCSEELAKERKEAQERFWWAAPIEEINGER* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0293 154 SUPERFAMILY SRF-like 16 86 IPR036879 GO:0003677|GO:0046983
Lan12g0293 154 Gene3D - 95 151 - -
Lan12g0293 154 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Lan12g0293 154 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Lan12g0293 154 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Lan12g0293 154 Coils Coil 120 140 - -
Lan12g0293 154 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Lan12g0293 154 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Lan12g0293 154 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 15 151 - -
Lan12g0293 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Lan12g0293 154 PANTHER MADS BOX PROTEIN 15 151 - -
Lan12g0293 154 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0293 Lan-Chr12 6833933 6834397 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0293 12 150 Type I MADS-box Gene Family AT5G60440 48.951 6.69e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan12g0293 SRF-TF 6.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0293 - - lang:109339900 274.633