Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0290 ATGTGTCACTCATACGCTCTCAACACTTCTCCATCGTTAATCTACTTTCATCTCTTTCATTTTCACAGAGCTATATCTAACTCTAACTCAAGGAGGAACATGGGTCGTCAAAAGATTGAGATGAAAAAGATAACCAAAGAGAGCAACCTTCAAGTCACATTCACCAAATGTCGCAATGGGCTTTTCAAAAAAGCCAATGAGCTTTGCACTCTTTGTGATGCACCAGTTGCCCTCATTGTCTTCTCTCCTGCAAACAAGCTTTTCTCTTTTGGTGAACCTGGTGTTGATGCTGTCATAGACCGCTATCTCATGAGGGACCAACCTCAAAACTTGGAGAACATGCATTTTCTAGAGGCTCACCAAAATGCTAATGTCCAGGAGCTGAATGAAAAGATTAGTCGTATCAATGAAGCTCTTGAGAGTGAGAAGAAATACAGTGAAGAGCTGGCTAAGCAAAGGAAAAAGGCACAAGAACAGTTCTGGTGGGCTGCTCCTATTGAGGAGATGAATGGAGACCAACTTGATCAATTCAAGATGGCTCTTGAGCATCTGAAGAAGAATATGCTTGGTGTTGTTGAAAGGCAGAATATTGTTGATGTTGCTGATGCTGATGTTGATGTTGATCCTGCTACTGCTATTCCACCTCCTCATTTTTTTACTGGTGGCCCATCTTCTTCAAACAACCCTTTGCAGCCACCAGCTCAACAATTTCTCGGTGTATCCACCATCACCACCACCACCACATATGCTTCAGAATAA 759 0.4242 MCHSYALNTSPSLIYFHLFHFHRAISNSNSRRNMGRQKIEMKKITKESNLQVTFTKCRNGLFKKANELCTLCDAPVALIVFSPANKLFSFGEPGVDAVIDRYLMRDQPQNLENMHFLEAHQNANVQELNEKISRINEALESEKKYSEELAKQRKKAQEQFWWAAPIEEMNGDQLDQFKMALEHLKKNMLGVVERQNIVDVADADVDVDPATAIPPPHFFTGGPSSSNNPLQPPAQQFLGVSTITTTTTYASE* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0290 252 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Lan12g0290 252 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 34 191 - -
Lan12g0290 252 Gene3D - 115 205 - -
Lan12g0290 252 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
Lan12g0290 252 PANTHER MADS BOX PROTEIN 34 191 - -
Lan12g0290 252 SUPERFAMILY SRF-like 34 114 IPR036879 GO:0003677|GO:0046983
Lan12g0290 252 Coils Coil 118 159 - -
Lan12g0290 252 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Lan12g0290 252 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Lan12g0290 252 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
Lan12g0290 252 CDD MADS_MEF2_like 35 103 IPR033896 GO:0000977|GO:0045944
Lan12g0290 252 Gene3D - 47 114 IPR036879 GO:0003677|GO:0046983
Lan12g0290 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 90 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0290 Lan-Chr12 6722383 6723141 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0290 31 186 Type I MADS-box Gene Family AT5G60440 51.572 9.32e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan12g0290 SRF-TF 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0290 - - lang:109341361 347.436