Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0268 ATGGATAAAGCAGAAGAAAAGCTTACAAAGATGGAAATTGATCTCTCTTTGGAAATAGATCCTGATCAGCATAATGAAGAAGAATCAAAGATTGATGAGAAAGTAAAAGAAGATAGGGATGAAGAAATGATAAGGAAAGATAATAAGGAAGAACTTCCTGAAGCCACAGCTGGTGAAATAGAAGATGATGATGTATCAATTGTAGAAGTATCTTTGCAAGATAATACAAAAGCAAGAGAGCAGTTAAGTGTGTTAAAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTGCAAATGAAATTTTCAATCATCCAAGAAAACAATAAAAGAAAGGATCATCAATTTTCTCTCTCACTTCAAGACATGGCAACCACCAGCAGTGAAGGACCATCAAGAATTCTTGAAATCTTCAATAACAAAATCCAAAGTACTCCTCCATCTCCACCAAACAACAGTGATAGTTTAAGTGAAAGTGAATTGGGTTTATCACTAAGTTTGCACACAAGCACAAGTGAAAAAGAAAAGGAGGAAGATATTAAAGATGAGAACAAAGAACAATTAACAAGTTTTGCATCAGTTCAGAACAAATTACAGCAGATACATAACTTATCTGGTATTTCTACCCATGCTGCTTCACCTCCTAATAGAAAAGCTAGGGTTTCAGTCAGAGCAAGATGTGAAACAAACACAATGAGTGATGGATGCCAATGGAGAAAATATGGACAGAAAATTGCTAAAGGAAATCCATGTCCACGAGCCTATTATCGTTGCACTGTAGCTGCAGGATGCCCGGTTAGGAAACAGGTGCAAAGATGCATAGATGACATGTCCATACTAATCACAACATATGAAGGAACACATAACCATCCACTCCCTGTTGGTGCAACTGCCATGGCTTCTACAGCTTCTGCAGCAACTTCTTTTGTATTGTTAGATTCAAGCAACCCTATTTCTGATATTGGAACCTCTACTTTTACACAACCATCATCACTCCCTTACAATAGTTTCCACTCTTTAAACCCACCACCTTCCTCCAATATTAGAACCATTAACCATTTTAATGATCCCTCCAAAGGGATTGTTCTTGATCTCACCAATAATCTCAATGATCACCCTCTACGTTTTCCCTTTGGCAGTACCTCCTCGAATGTGACAACGAGTGATCCTCGTTTATCTTGGATGCCAAACAAGTACCAAGGTGGTGGTAGTAGTGCAATTGCAATGAACAATTTTCATAACCCTACTAGACAAGTAGTGGATAATCAAGATCATGATCACAATGTGTCTGCAATTGCCTCAGATCCTAAGTTTAGGAATGCGGTTGCAGCAGCCATAACATCACTCATGAATAAAGAGAGCCATGGTAGTTCTACCTTTGGTCCTAGGAGTGGCCAGAATGGTAGCTCTAGCAACAATAGTTGGGTCTTAGATTCTCTTTCAACAAATGGCAAGTCCATCTGA 1509 0.385 MDKAEEKLTKMEIDLSLEIDPDQHNEEESKIDEKVKEDRDEEMIRKDNKEELPEATAGEIEDDDVSIVEVSLQDNTKAREQLSVLKMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSIIQENNKRKDHQFSLSLQDMATTSSEGPSRILEIFNNKIQSTPPSPPNNSDSLSESELGLSLSLHTSTSEKEKEEDIKDENKEQLTSFASVQNKLQQIHNLSGISTHAASPPNRKARVSVRARCETNTMSDGCQWRKYGQKIAKGNPCPRAYYRCTVAAGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAATSFVLLDSSNPISDIGTSTFTQPSSLPYNSFHSLNPPPSSNIRTINHFNDPSKGIVLDLTNNLNDHPLRFPFGSTSSNVTTSDPRLSWMPNKYQGGGSSAIAMNNFHNPTRQVVDNQDHDHNVSAIASDPKFRNAVAAAITSLMNKESHGSSTFGPRSGQNGSSSNNSWVLDSLSTNGKSI* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0268 502 MobiDBLite consensus disorder prediction 156 184 - -
Lan12g0268 502 MobiDBLite consensus disorder prediction 156 199 - -
Lan12g0268 502 Pfam WRKY DNA -binding domain 249 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan12g0268 502 Coils Coil 75 109 - -
Lan12g0268 502 MobiDBLite consensus disorder prediction 1 55 - -
Lan12g0268 502 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 496 IPR044810 GO:0003700
Lan12g0268 502 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan12g0268 502 Gene3D WRKY domain 232 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan12g0268 502 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 12 496 - -
Lan12g0268 502 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan12g0268 502 MobiDBLite consensus disorder prediction 468 502 - -
Lan12g0268 502 MobiDBLite consensus disorder prediction 185 199 - -
Lan12g0268 502 SUPERFAMILY WRKY DNA-binding domain 240 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan12g0268 502 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0268 Lan-Chr12 6404335 6407523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0268 38 410 WRKY Transcription Factor Family AT1G68150 44.503 6.82e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan12g0268 WRKY 3.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0268 - - lang:109350732 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0268 12 6404335 6407523 Lan1g0787 1 18505116 18508240 LSH