Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0231 ATGGGTATTGATTACTATAAAATTCTTAATGTAGATCGAAGTGCTAAAGATGATGATCTCAAGAAAGCATATCGCAAACTTGCCATGAAGTGGCACCCTGATAAGAACCCTAACAATAAGAAAGATGCTGAAGCCAATTTCAAGCAAATCTCAGAAGCTTATGATGTATTGAGTGATCCACAAAAGAGACAAGTGTATGATCAGTTTGGCGAGGAAGGATTGAAGGGGCAGGTGCCACCCCAAAGTGCTGGTGGATTTTCCGGTGGAAGTGATGGTGGTGGGCCGACGATGTACCGGTTTAACCCCAGAAATGCAGATGATATATTCTCAGAGTTCTTTGGGTTTACGAGTCCATTTGGTGGAATTGGAGATATGGGTGGTCGGGCTGGTGCATCTGGCTTTCCAAGGGGTATGTTTAGCGATGACCTTTTCTCGTCGTTTAGGAGTGGAGCTGGTGAAGGCTCTGGCAATGTGCATGCGCCAAGGAAAAGTGCACCCATAGAGAAAACTTTGCATTGCAATTTGGAGGATTTGTACAAAGGAACCACCAAAAAAATGAAGATTTCCAGGGATGTTACTGATTCTAGTGGGAGGTCCACTACAGTGGAGGAAATTCTAACAATTGAGGTTAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAATGAACAGAGAGGAATTATACCTGCAGATCTCGTTTTTATTATCGATGAGAAGCCTCATAGTGTCTTCAAGAGAGATGGCAATGATCTTGTTGTCACCCAGAAAATATCTCTTGTAGAAGCTTTGACAGGTTACACAATACAGCTGACAACCCTTGACGGGCGGAATCTTACCGTCGCCATCAACTCCATCATTAGTCCTTCTTATGAAGAAGTTATCAAAGGAGAGGGCATGCCCATTCCCAAAGAACCTTCCAAAAGGGGTAACTTGAGAGTCAAGTTCAATATCAAATTCCCCTCTAGGCTTACATCAGAGCATAAAATTGGCATTAAGCGATTGTTGACGTCTCCGTGA 1032 0.4312 MGIDYYKILNVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEANFKQISEAYDVLSDPQKRQVYDQFGEEGLKGQVPPQSAGGFSGGSDGGGPTMYRFNPRNADDIFSEFFGFTSPFGGIGDMGGRAGASGFPRGMFSDDLFSSFRSGAGEGSGNVHAPRKSAPIEKTLHCNLEDLYKGTTKKMKISRDVTDSSGRSTTVEEILTIEVKPGWKKGTKITFPEKGNEQRGIIPADLVFIIDEKPHSVFKRDGNDLVVTQKISLVEALTGYTIQLTTLDGRNLTVAINSIISPSYEEVIKGEGMPIPKEPSKRGNLRVKFNIKFPSRLTSEHKIGIKRLLTSP* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0231 343 Gene3D DnaJ domain 3 122 IPR036869 -
Lan12g0231 343 Gene3D - 164 245 - -
Lan12g0231 343 CDD DnaJ 4 59 IPR001623 -
Lan12g0231 343 CDD DnaJ_C 165 328 - -
Lan12g0231 343 Gene3D - 246 326 - -
Lan12g0231 343 SMART dnaj_3 3 62 IPR001623 -
Lan12g0231 343 MobiDBLite consensus disorder prediction 73 95 - -
Lan12g0231 343 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lan12g0231 343 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lan12g0231 343 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 341 - -
Lan12g0231 343 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lan12g0231 343 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lan12g0231 343 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lan12g0231 343 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lan12g0231 343 Pfam DnaJ domain 4 67 IPR001623 -
Lan12g0231 343 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 341 - -
Lan12g0231 343 Pfam DnaJ C terminal domain 167 325 IPR002939 -
Lan12g0231 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 248 332 IPR008971 GO:0006457|GO:0051082
Lan12g0231 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 167 246 IPR008971 GO:0006457|GO:0051082
Lan12g0231 343 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0231 Lan-Chr12 4738449 4741053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0231 5 67 C2H2 Transcription Factor Family AT1G74250 35.821 2.21e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0231 K09510 - sind:105174570 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0231 12 4738449 4741053 Lan12g0231 12 4738449 4741053 ECH
Lan11g1695 11 33226747 33230494 Lan12g0231 12 4738449 4741053 PCT
Lan12g0231 12 4738449 4741053 Lan11g1695 11 33226747 33230494 PCT