Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0176 ATGGAGTCAAGGAGTTGCATGAACGTGGCGTGTTCCACCAGAACGTCGATTCTGTGGCGCAAAGGTTGGGCCTTGCGATCCGGCGAATTAGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAACAATCAACATTTTGTGATTTGTTTCACTCAAATGATGATGGTTGGAGAGAGTGCACTTCATGTGGAAAGCGACTCCATTGTGGATGTGCTGCCTCTTTGTCTCAGCTTGAGTTACTAGATCTGGGTGGTGTAAGGTGTATAAATTGCATGAAGAATTTCGGAATTCAACCTGTTGCAACTACTGAAAAGGCTAATGGATCTGGGACATCAAAGGTAAAAAATGTCAGTGAACAACATTGCATATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAATAGCGCATTATGCAGAGAGCGATGGGCTGAGGTGCTGGCTCAAAGCACATAATAATGTTGACACAAGTGGGACTTCTGCAGAAATGAAACTGGAAGAAGTTTCACCTTCGATTGAAGATATTGGGAACACTTTGATATCACAATTTCGTCGTGAGTTTAATGGATCATCTAAGGCTGCCAAAGCAGACAACAATAAGTCAGACATGGAAATGCGAGATATATATGAATCATTGGCACAAACAAATTTGAATATGACCCTTGCTACTCCATTAGGAAACTCAAATCCATTTCAGAGAGCTATTGTTGTTGAAAGGGAACAAAGTAAAACAGCGTCTCCACTTCTGTCAGGGTCTAGGTCTCGCCATCTATTACCTAAGCCCCCTAGGTCAACTCTTGCTGTGGGTTTAGAAGCAAATACAGGCATGGCATCCCAGATTCGTGTAGCAAGGCCTCCTGCTGAAGGACGGGGAAGGAATCAGTTACTTCCACGTTATTGGCCTAGGATTACAGATCAAGAGTTGCAGCAAATATCTGGAGGTTCAAATTCCACCATCGTGCCACTCTTTGAGAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTTTACCAAAAGCATGTGCTGAAGCCTATTTTCCTCCTATCTCTCAACCAGAGGGCCTTCCTTTGCGAATCCAAGATGTGAAGGGAAAAGAATGGGTGTTCCAGTTTAGGTTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACTCCGTGCATCCAGTCTATGCAATTGCAAGCTGGGGATACTGTAACATTCAGTCGTATGGACCCTGAGGGGAAACTTGTAATGGGGTTTAGGAAGGCAATTAATTCTTCAGCAGTACAGGACGCTCATCCATCTAATGTGCCCAATGGTCCTCATTCAAGTGAAACTTCCTACTCTGGTGTTTATGAGAATTTACCTATATTAGGTGGTTCTGGCCTTCTTCAGTCACAGAAGGGAAGTTCAGAGACCCACCTACATATGCTGTCTAAAGAATGGAATTCAGCTGGTGGTGACATGAACTTGCATAATATTGAGATGCCTGAAAGCAGGAAAAGAGAGGGGATGCTTTTGCCAGCTATGATGGTTCCTGAGAAGAAGAGAGCTCGAAATATTGGGTCAAAAAGTAAGAGATTGCTTATTGAAAGCCAGGATGCACTGGACCTGAAACTTACATGGGAAGAGGCTCAGGATTTGCTACGTCCACCTCCAACAACTAAGCCAAGCATTGTAATGATTGAGGATCATATATTTGAAGAGTATGAAGAACCTCCTGTCTTTGGTAAGAGGAGTATATGTGTAGCTCACTCAACTGGGATAAATGAGCAGTGGACACAATGTGATATGTGCTCAAAATGGCGGAAGTTGCCAATTGATGTGCTTGTTCCTCCTAAGTGGACATGCACGGAAAATTTATGGGATCAGAATAGGTCTTCATGTTCTGCTCCCAACGAATTGAATCCAAGGGAACTGGATAATCTGCTGAGACTGAACAAGGAATTCAAGAAACAAAAAGTGGCAGCAAGCTCCAGACAGCTGGAACTTGAATCTTCTGGACTGGATGCTTTGGCGAACGCTGCAACACTTGGAGATGATGCAGGTGACCCTGGCAGCACACCGGTTGCTACCACCACAAAACACCCTCGGCATAGGCCTGGGTGCTCCTGCATTGTGTGTATCCAACCACCAAGTGGGAAGGGTAAACACAAACCTACCTGCACCTGCAATGTGTGCATGACAGTTAAACGCCGGTTTAAAACCCTGATGATGCGGAAGAAGAAGCGTCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGAAATCATTGGGGTCCAAGGATGAAACAGAAGTAGACAGTACCTCTCTTTTAACTCCTGTTGATGGTTCAGAGAATGGAGCAAGGGTACCAAATGAGTTGGACTCAAGGAGTCAAAACCACATGGCTGAAGCCGCAAAGGGACATTTAGACTTGAATTGCCAACCTGATCGAGAAGACACGCAAGCCGGGCTAAATAATAATGTCAGCATGATGAGTCTTCTTCAAGAAGCAAATCTCCCACTGGAGACCTATATGAAGAAAAATGGCATTACTAGCTTGACATTGGAGCAGCAAACAAATTCAGCTTCAAATGTGCCGGCACCAACAACCAATGAGAGTGAGGGAAGACATAATGAGGATTGCTTTACTGCTTCTGCTGCTCATGAGCAGGAAAGCAGTCCTGAAGAGAATAGTGAGCAAGATAAAGGTCAGAACAGTTCACACTCATGA 2724 0.4427 MESRSCMNVACSTRTSILWRKGWALRSGELADLCDKCGSAYEQSTFCDLFHSNDDGWRECTSCGKRLHCGCAASLSQLELLDLGGVRCINCMKNFGIQPVATTEKANGSGTSKVKNVSEQHCISLANQLNVRGMQIAHYAESDGLRCWLKAHNNVDTSGTSAEMKLEEVSPSIEDIGNTLISQFRREFNGSSKAAKADNNKSDMEMRDIYESLAQTNLNMTLATPLGNSNPFQRAIVVEREQSKTASPLLSGSRSRHLLPKPPRSTLAVGLEANTGMASQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGGSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKAINSSAVQDAHPSNVPNGPHSSETSYSGVYENLPILGGSGLLQSQKGSSETHLHMLSKEWNSAGGDMNLHNIEMPESRKREGMLLPAMMVPEKKRARNIGSKSKRLLIESQDALDLKLTWEEAQDLLRPPPTTKPSIVMIEDHIFEEYEEPPVFGKRSICVAHSTGINEQWTQCDMCSKWRKLPIDVLVPPKWTCTENLWDQNRSSCSAPNELNPRELDNLLRLNKEFKKQKVAASSRQLELESSGLDALANAATLGDDAGDPGSTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQKSLGSKDETEVDSTSLLTPVDGSENGARVPNELDSRSQNHMAEAAKGHLDLNCQPDREDTQAGLNNNVSMMSLLQEANLPLETYMKKNGITSLTLEQQTNSASNVPAPTTNESEGRHNEDCFTASAAHEQESSPEENSEQDKGQNSSHS* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0176 907 MobiDBLite consensus disorder prediction 743 766 - -
Lan12g0176 907 CDD B3_DNA 322 423 IPR003340 GO:0003677
Lan12g0176 907 ProSiteProfiles Zinc finger CW-type profile. 588 638 IPR011124 GO:0008270
Lan12g0176 907 Pfam CW-type Zinc Finger 593 635 IPR011124 GO:0008270
Lan12g0176 907 MobiDBLite consensus disorder prediction 853 907 - -
Lan12g0176 907 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 859 - -
Lan12g0176 907 MobiDBLite consensus disorder prediction 853 870 - -
Lan12g0176 907 SUPERFAMILY DNA-binding pseudobarrel domain 321 424 IPR015300 -
Lan12g0176 907 Gene3D - 302 428 IPR015300 -
Lan12g0176 907 MobiDBLite consensus disorder prediction 430 449 - -
Lan12g0176 907 MobiDBLite consensus disorder prediction 677 701 - -
Lan12g0176 907 SMART B3_2 324 424 IPR003340 GO:0003677
Lan12g0176 907 MobiDBLite consensus disorder prediction 739 790 - -
Lan12g0176 907 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 859 - -
Lan12g0176 907 MobiDBLite consensus disorder prediction 243 263 - -
Lan12g0176 907 Pfam B3 DNA binding domain 324 423 IPR003340 GO:0003677
Lan12g0176 907 ProSiteProfiles B3 DNA-binding domain profile. 324 425 IPR003340 GO:0003677
Lan12g0176 907 Gene3D - 591 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0176 Lan-Chr12 2555414 2563782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0176 1 858 B3 DNA Binding Superfamily AT4G32010 49.826 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan12g0176 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0176 - - gmx:100778833 1489.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0176 12 2555414 2563782 Lan12g0176 12 2555414 2563782 ECH
Lan12g0176 12 2555414 2563782 Lan1g0720 1 16471915 16480020 LSH