Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0173 ATGGCTTTGATTGTGGGTCAACAATCAAACTTCAAGCACTTTTGTAAAATATGCAAGAAAGGTTTCGGTTGTGGAAGAGCTCTTGGAGGACACATGAGGGCACATGGCATAGGTGATGAAACTAGGCACATGGATGATGATGATGATGACGATGACGACGACCCTGAAACTGATTGGGAAGAGAGGCTTGATGGTAATGTGTCACCAAGCAATAAACGTATGTATGCCTTGAGAACAAACCCTAATAGGTTAAAGAGTTGTCGAGTATGTAAGAATTGTGGTAAAGAGTTTTTATCATGGAAATCTTTCCTTGAACATGGAAAGTGCACCTCTGAAGACGCCGAATCTCTAGTCTCATCTCGTGCTTCTGATGATGATGGTGGTGATGATGATAATAGTGTTAGCCGAAGAGGTTGTGGTTGGTCGAAAAGGAAAAGATCATTCAGAACCAAAGTTGGTGATAATTTCAATAAATATATTTGTCCTTCAAGTGAGGAAGAAGATCTAGCTAACTGTTTGATGATGTTGTCAAATGCCATTGTTGATCCTCTTGTTGTTGAGCATGAAGAGCCTTGTGCCTCAGCAAGCAAAGACGAAGAAAGAAGAAACCCAATGAACTTCATTGCACCATTGTCATCTAGAGTTAACCATGTTAATAACAAGGCTAAAGGGGTTGCAAATGGCTTGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCTCATCAAGCATTGGGTGGCCATAGAGCTAGCCACAAAAAAGTTAAGGGATGTTTTGCTGCAAGACAAGATAACTTTGATGATAGTTTACCTGAAGATGATGCCATAACACATGAAGATTTTTTCACTACAAAATCAAACTCCACTCTTCAATTTGATCATGGTTCCACATTACCCTCTTCCTCTAAGAGAAAATCCAAAGTCCATCAATGTTCCATTTGTCATAGAAGTTTCTCTTCTGGACAAGCATTAGGGGGACACAAAAGGTGTCATTGGATCACATCATCAAATGCACTAGATACTTCAACATTGGCTAGATTTCAACAATTTCAAGACCATATTGAACAAATACCAAAGTTTGATAGTTCTTCTGAGCCACTTGATCTCAAGCTAGATCTTAACCTTCCTGCTTCTGCCAATGAACTAGCCAGAAGGAATATATCCACAGAAATTCTCATGCAGCCATGGGTTGGAATAAACAACCTAATTAAAGATGATGATAATAATAATAGTAGTCATTGTCAGAATCAACATCAACCTAACCAAATTGACAATAACAACAATGATGAAGAAAATAATAATAACAATAGCAATACTTTGATGCAAAATGATGTGGATAATGAAGGTGATAGTAATGTCAAATTAGCAAAACTTAGTGAGCTAAAGGACATGAACAATGATGGAAGTTCTTCACCATGGTTGCAGGTTGGATTCAGCTCTACAACTAATGTGGGGGGAGAGAAGTCATAA 1470 0.3816 MALIVGQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDETRHMDDDDDDDDDDPETDWEERLDGNVSPSNKRMYALRTNPNRLKSCRVCKNCGKEFLSWKSFLEHGKCTSEDAESLVSSRASDDDGGDDDNSVSRRGCGWSKRKRSFRTKVGDNFNKYICPSSEEEDLANCLMMLSNAIVDPLVVEHEEPCASASKDEERRNPMNFIAPLSSRVNHVNNKAKGVANGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARQDNFDDSLPEDDAITHEDFFTTKSNSTLQFDHGSTLPSSSKRKSKVHQCSICHRSFSSGQALGGHKRCHWITSSNALDTSTLARFQQFQDHIEQIPKFDSSSEPLDLKLDLNLPASANELARRNISTEILMQPWVGINNLIKDDDNNNSSHCQNQHQPNQIDNNNNDEENNNNNSNTLMQNDVDNEGDSNVKLAKLSELKDMNNDGSSSPWLQVGFSSTTNVGGEKS* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0173 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 309 331 IPR013087 -
Lan12g0173 489 MobiDBLite consensus disorder prediction 119 139 - -
Lan12g0173 489 MobiDBLite consensus disorder prediction 37 73 - -
Lan12g0173 489 PANTHER OS02G0659100 PROTEIN 1 485 - -
Lan12g0173 489 ProSitePatterns Zinc finger C2H2 type domain signature. 311 331 IPR013087 -
Lan12g0173 489 MobiDBLite consensus disorder prediction 407 449 - -
Lan12g0173 489 SUPERFAMILY beta-beta-alpha zinc fingers 229 331 IPR036236 -
Lan12g0173 489 MobiDBLite consensus disorder prediction 461 489 - -
Lan12g0173 489 SMART c2h2final6 309 331 IPR013087 -
Lan12g0173 489 SMART c2h2final6 230 252 IPR013087 -
Lan12g0173 489 SMART c2h2final6 13 35 IPR013087 -
Lan12g0173 489 PANTHER OS02G0659100 PROTEIN 1 485 - -
Lan12g0173 489 MobiDBLite consensus disorder prediction 119 138 - -
Lan12g0173 489 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Lan12g0173 489 Pfam C2H2-type zinc finger 13 35 - -
Lan12g0173 489 Pfam C2H2-type zinc finger 230 254 - -
Lan12g0173 489 Pfam C2H2-type zinc finger 308 333 - -
Lan12g0173 489 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Lan12g0173 489 SUPERFAMILY beta-beta-alpha zinc fingers 13 107 IPR036236 -
Lan12g0173 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Lan12g0173 489 MobiDBLite consensus disorder prediction 43 60 - -
Lan12g0173 489 Gene3D Classic Zinc Finger 228 331 - -
Lan12g0173 489 MobiDBLite consensus disorder prediction 463 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0173 Lan-Chr12 2438612 2440335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0173 127 375 C2H2 Transcription Factor Family AT1G02040 37.008 4.89e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan12g0173 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0173 - - gmx:100793846 684.871