Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0154 ATGCTCTCAACTATGGTATTATTTCGCTTGCTAATAACACTATTAATCGTTCCCTTTCTGTTTTCCTCTATTGTTTCTGGTTACTCATTGAGTGACATCAAAAAATGGTGTAGCCAAACCCCTAACCCTAAGCCATGTGAGTATTATTTGAGCGACAATGCTTTCAACAAACCCATTAAAAACAAGTCTGATTTTCTTAAAGTGTCCTTACAAATCGCCTTAGATCAAGCACAGAAAGGCCAAGAAAACGCTCACTCACTTGGTCCTAAGTGCCGGAACTCAAAAGAAAGAGCTGTATGGGCTGATTGCCTTGAACTCTATGAGTACACCGTTCAAAGGCTCAACCAAACCATAAACCCTAACACAAAGTTCATAGAAGTTGATGCTCAAACATGGCTCAGCACGGCCCTAACAAACCTGGAGACATGCAAAGATGGGTTCAATGACCTTGGTGTTTCAGATAATGTGTTACCCTTGTTGTCCAATAATGTTACTAAGTTGATAAGCAACGTCTTGTCTTTGAACAAGGTTCCTGACCAACAACAAAGTTACAAAGATGGGTTTCCAACATGGGTCAAGCCCAGAGACGGGAAGCTGTTGCGATCATATGCAATTGCTCAGGCTAATGTGGTGGTTGCGAAAGATGGGTCAGGCAAATACAAAACAGTGAAAGAAGCAATTGATGGTGCACCACAGAGTAGCAATGACAGGTATGTTATATATGTGAAGAAAGGTACATACAATGAACAAATTGTGATAAAAGCAAAGAATATCATGTTGGTAGGAGATGGTATTGGCAAGACCATTATCACAGGTAGTAAAAGCGTTGAAGGGGGCAGCACAACCTTCAATTCCGCCACGGTTGCTGCTGAGGGGTATGGATTTATGGCTCAATACATGACATTTAGAAACACTGCAACAACTACCCAAGCCGTGGCACTACGTTCTGGCTCAGATAATTCAGTTTTTTACAAATGTGGTTTCGAAGGTTACCAAGACACACTATATGTTCATTCACAGAGACAATTTTATAGGGAGTGTGACATCTATGGTACAGTTGATTTTATCTTTGGTAATGCAGCTGTTGTTTTACAAAATTGTAACCTTTATGCAAGAAATGGTTATCAAAATACAGTAACAGTTACAGCTCAAGGTCGAACTGATCCAAACCAAAACACCGGAATCATCATTCATAACTCTAAATTTAAAGGTGCCCCAGGTTTTAAGTCAAAGTCAGTAAAATCATATCTAGGGAGGCCATGGAAAGAATACTCAAGAACAGTGTTCTTGAAAACTTACCTTGATAGTTTGATAAACCCAGCTGGTTGGATGGAATGGGATGGAAATTTTGCATTGAATACTTTATACTATGCTGAATATGCAAACACAGGTCCAGGTTCCTCCACCAAAAATCGAGTAAAATGGAGGGGTTATGAGGTTATTACTAGTGCATCTAAGGCTGAGCCATTCACAGTTGGAAAATTTCTTGATGGTAATTCATGGTTACCGGCCACTGGTGTGCCTTTTACTTCTGGGCTTTAA 1542 0.4008 MLSTMVLFRLLITLLIVPFLFSSIVSGYSLSDIKKWCSQTPNPKPCEYYLSDNAFNKPIKNKSDFLKVSLQIALDQAQKGQENAHSLGPKCRNSKERAVWADCLELYEYTVQRLNQTINPNTKFIEVDAQTWLSTALTNLETCKDGFNDLGVSDNVLPLLSNNVTKLISNVLSLNKVPDQQQSYKDGFPTWVKPRDGKLLRSYAIAQANVVVAKDGSGKYKTVKEAIDGAPQSSNDRYVIYVKKGTYNEQIVIKAKNIMLVGDGIGKTIITGSKSVEGGSTTFNSATVAAEGYGFMAQYMTFRNTATTTQAVALRSGSDNSVFYKCGFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNLYARNGYQNTVTVTAQGRTDPNQNTGIIIHNSKFKGAPGFKSKSVKSYLGRPWKEYSRTVFLKTYLDSLINPAGWMEWDGNFALNTLYYAEYANTGPGSSTKNRVKWRGYEVITSASKAEPFTVGKFLDGNSWLPATGVPFTSGL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0154 513 Pfam Pectinesterase 209 499 IPR000070 GO:0030599|GO:0042545
Lan12g0154 513 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Lan12g0154 513 SUPERFAMILY Pectin lyase-like 204 512 IPR011050 -
Lan12g0154 513 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 177 IPR006501 GO:0004857
Lan12g0154 513 Pfam Plant invertase/pectin methylesterase inhibitor 32 174 IPR006501 GO:0004857
Lan12g0154 513 Gene3D - 203 513 IPR012334 -
Lan12g0154 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 177 IPR035513 -
Lan12g0154 513 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Lan12g0154 513 PANTHER PECTINESTERASE 8 512 - -
Lan12g0154 513 SMART PMEI_2 28 174 IPR006501 GO:0004857
Lan12g0154 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 176 IPR035513 -
Lan12g0154 513 CDD PMEI-like_3 36 176 - -
Lan12g0154 513 PANTHER PECTINESTERASE 8 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0154 Lan-Chr12 1892315 1896943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0154 5 513 Carbohydrate Esterase AT2G45220 62.913 0.0 672