Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0153 ATGGCACCATTTAACTTGATGATAACACTTGTAATCGTTCCCTTTTTATTTTCCTCTATTGTTTCTGGTTACTCATTGAGTGACATCAAAAAATGGTGTAGCCAAACCCCTAACCCTACACCATGTGAGTATTATTTGAGCAATAATGCTTTCAACAAACCCATTAAAAACAAGTCTGATTTTCTTAAAGTGTCCTTACAACTTGCTTTAGATAGAGCACAAAAAGGCCAAGAAAACACTCACTCACTTGGCCCTAAGTGCCGTAACTCACAAGAAAGAGCTGCATGGGCTGATTGTATTGAACTCTATGAGTACACAATTCAAAAACTCAACAAAACCATAGACCCTAACACAAAGTGCACAGAAGTTGATGCTCAAACATGGCTCAGTACAGCTCTAACAAACCTTCAGACATGCAAAGAAGGGTTCTATGACCTTGGTGTTTCAGATTATGTGTTACCCTTGTTGTCCAATAATGTTACTAAGTTGATAAGCAACACCTTGTCTTTGAACAAGGTTCCTGACCAACAACAAAGTTACAAAGATGGGTTCCCAACATGGGTAAAACCCGGTGACCGGAAACTTTTGCAATCATCTTCTGCTGCTTCTAAGGCTAATGTTGTGGTTGCTAAAGATGGTTCAGGCAAGTATACGACAATAAAAGCAGCAATTGATGCTGCCCCAAAGAGTAGTAGTACGAGGTATATTATATATGTGAAAACAGGTACATATAATGAACAAGTTGAGATAAGTGGAAAGAATATCATGTTGGTAGGAGATGGTATTGGCAAGACAATTATCACAGGTAGCAAAAGCGTTGGAGGTGGTAGCACAACTTTCAAATCTGCCACTGTTGCTGCTGTTGGTGATGGATTTATTGCTCAAGACATCACAATTAGAAACACTGCAGGAGCAACAAATCACCAAGCTGTGGCACTACGTTCTGGCTCAGACCTATCAGTATTTTACAAATGTAGCCTTGAAGGTTACCAAGACACACTATATGTTCATTCAGAGAGACAATTTTATAGAGAGTGTGACATCTATGGCACAGTTGATTTTATCTTTGGTAATGCAGCTGTTGTCATACAAAATTGTAACATTTATGCAAGAACACCTCCTCAAAAAACCATAACAGTTACGGCTCAGGGTCGAACCGATTCGAACCAGAACACCGGAATTATAATTCATAACTCTAAGGTTACAGGTGCCTCAGGTTTTAGCTCAACCTCAGTAAAATCATATCTAGGGAGGCCATGGAAAGAATACTCAAGAACAGTGTTCATGAAAACTTACCTTGATAGTTTGATAAACCCAGCTGGTTGGATGGAATGGGATGGAAATTTTGCATTGAATACTTTATACTATGCTGAATATGCAAACACAGGTCCAGGTTCTTCGACCGCGAATCGGGTAACATGGAAGGGTTACCATGTTCTTACTACTACATCTCAGGCATCACCATTCACAGTTGGAAACTTTATTGCTGGTAGTTCATGGTTACCTGCTACTGGTGTTCCTTTTACTTCTGGGCTTTAA 1539 0.3957 MAPFNLMITLVIVPFLFSSIVSGYSLSDIKKWCSQTPNPTPCEYYLSNNAFNKPIKNKSDFLKVSLQLALDRAQKGQENTHSLGPKCRNSQERAAWADCIELYEYTIQKLNKTIDPNTKCTEVDAQTWLSTALTNLQTCKEGFYDLGVSDYVLPLLSNNVTKLISNTLSLNKVPDQQQSYKDGFPTWVKPGDRKLLQSSSAASKANVVVAKDGSGKYTTIKAAIDAAPKSSSTRYIIYVKTGTYNEQVEISGKNIMLVGDGIGKTIITGSKSVGGGSTTFKSATVAAVGDGFIAQDITIRNTAGATNHQAVALRSGSDLSVFYKCSLEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVIQNCNIYARTPPQKTITVTAQGRTDSNQNTGIIIHNSKVTGASGFSSTSVKSYLGRPWKEYSRTVFMKTYLDSLINPAGWMEWDGNFALNTLYYAEYANTGPGSSTANRVTWKGYHVLTTTSQASPFTVGNFIAGSSWLPATGVPFTSGL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0153 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 173 IPR035513 -
Lan12g0153 512 SUPERFAMILY Pectin lyase-like 200 511 IPR011050 -
Lan12g0153 512 PANTHER PECTINESTERASE 4 511 - -
Lan12g0153 512 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Lan12g0153 512 SMART PMEI_2 24 170 IPR006501 GO:0004857
Lan12g0153 512 PANTHER PECTINESTERASE 4 511 - -
Lan12g0153 512 SMART complete 239 410 IPR006633 -
Lan12g0153 512 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 173 IPR006501 GO:0004857
Lan12g0153 512 Gene3D - 200 512 IPR012334 -
Lan12g0153 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 173 IPR035513 -
Lan12g0153 512 Pfam Plant invertase/pectin methylesterase inhibitor 28 170 IPR006501 GO:0004857
Lan12g0153 512 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Lan12g0153 512 Pfam Pectinesterase 206 497 IPR000070 GO:0030599|GO:0042545
Lan12g0153 512 CDD PMEI-like_3 32 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0153 Lan-Chr12 1866024 1869211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0153 1 512 Carbohydrate Esterase AT2G45220 67.573 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0153 K01051 - gmx:100782892 876.7