Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0152 ATGACGACTTCTACCACCGTCTTGTTCCTCCTTCTCACGGCCACCGCCACCACCTTTTGCCTCCAAGAAATGGAACTAATCCATATGGCCCAAACCCAGGTCTCAATGGCCAAGAATTGGGTTGGGAACTCAATGAGATTGCATGGCTTTGAAAGCCTAAGGATTTCAAATCAAACTAGTGTTGCTCTAAGTGATTGTGCAAAGCTCTATGGAGATAGTGAATTCAGGCTCTCTCACATGATTTCTGATAAGAGTAGTTACACCAGAGAAGATGCTATTACATGGATAAGTGCTGTGATGACAAATCATAGGACTTGTTTGGATGGTTTGCATGAAAAAGGATATGCTGAAACTCAGATTTTGGATAAAAACTTAACCATGTTACTTGGCCAAGCTCTTGGTTTGTATGCAAATAACAAAGACAAACCCAAAGAATCACCTGAGACACCAGTATCATCAAATATACTATTAGCATCATGGAGTAGAGCAACTTCAAAGGCAGACTTTACAGTGGCACAAGATGGTTCAGGCACCCACAGAACAATCAGAGAAGCAGTAGAAGCAGTGGCATCAATGGGTCACAACCGTCCTGGAAGAATAGTTATATATGTAAAATCAGGGGTTTATAATGAGAAAGTTGAGATTGGACAAAAGCTGCATAATGTTATGTTTGTTGGAGATGGCATAGACAAAACTATTGTCACTGGCAGCAGAAATTTTGTTGATGGTTCTACAACTCTAGGTTCAGCCTCATTTGATGTATCTGGTGACGGATTTTGGGCAAGAGATATGACATTTGAGAACACAGCAGGCCCAGACAAGCACCAAGCAGTAGCACTTAAGGTAAGTTCAGATCTCTCAATCTTCTATAGATGCAGCTTCAGAGCATACCAAGACACTCTTTATGTTCATTCAAATCGCCAATTCTACCGTGATTGTCACATATATGGCACCATAGATTTCATATTTGGTGATGCAACAGTTCTCTTCCAAAACTGTGACATCTTTGTAAGGAAGCCAATGACCCATCAAACTAACTTCATTACAGCACAAGGAAGAGATGATCCTAACAAAAACACAGGGATTTCTATACACAGTTGTCGTGTTAGGCCCGCGTCCGAATTCGCCACGGCTAGGGATAACTCTTTGAAGACCTTCTTAGGCAGGCCATGGAAGAGATACTCTAGGACTGTGTTTTTGAAAAGTGATTTAGATGGGATGGTTCATCCAAGAGGGTGGGGTGAATGGGAAGGAAACTTTGCACTTTCAACTTTGTATTATGCTGAGTATATGAACACAGGAAATGGTGCATATACTCAGAATAGAGTGAATTGGCCTGGTTTTCATGTGCTTAATAGTGCTAGTGAGGCTGCACCTTTTACCGCGAGTCGATTTTTGGAAGGAGATCGGTGGATTCCAGCTTCAGGGGTTCCATTCTGGTCTGGAATTTAA 1452 0.418 MTTSTTVLFLLLTATATTFCLQEMELIHMAQTQVSMAKNWVGNSMRLHGFESLRISNQTSVALSDCAKLYGDSEFRLSHMISDKSSYTREDAITWISAVMTNHRTCLDGLHEKGYAETQILDKNLTMLLGQALGLYANNKDKPKESPETPVSSNILLASWSRATSKADFTVAQDGSGTHRTIREAVEAVASMGHNRPGRIVIYVKSGVYNEKVEIGQKLHNVMFVGDGIDKTIVTGSRNFVDGSTTLGSASFDVSGDGFWARDMTFENTAGPDKHQAVALKVSSDLSIFYRCSFRAYQDTLYVHSNRQFYRDCHIYGTIDFIFGDATVLFQNCDIFVRKPMTHQTNFITAQGRDDPNKNTGISIHSCRVRPASEFATARDNSLKTFLGRPWKRYSRTVFLKSDLDGMVHPRGWGEWEGNFALSTLYYAEYMNTGNGAYTQNRVNWPGFHVLNSASEAAPFTASRFLEGDRWIPASGVPFWSGI* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0152 483 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 4 482 - -
Lan12g0152 483 SUPERFAMILY Pectin lyase-like 163 482 IPR011050 -
Lan12g0152 483 SMART PMEI_2 4 135 IPR006501 GO:0004857
Lan12g0152 483 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 126 IPR035513 -
Lan12g0152 483 PANTHER PECTINESTERASE 4 482 - -
Lan12g0152 483 Pfam Plant invertase/pectin methylesterase inhibitor 29 132 IPR006501 GO:0004857
Lan12g0152 483 Pfam Pectinesterase 168 469 IPR000070 GO:0030599|GO:0042545
Lan12g0152 483 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 137 IPR035513 -
Lan12g0152 483 CDD PMEI-like_4 26 137 - -
Lan12g0152 483 ProSitePatterns Pectinesterase signature 2. 315 324 IPR033131 -
Lan12g0152 483 Gene3D - 162 483 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0152 Lan-Chr12 1840616 1844738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0152 5 483 Carbohydrate Esterase AT3G60730 53.725 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0152 K01051 - gmx:100792852 741.88