Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0131 ATGTTGGACTATGAATGGGGCAATCCATCAAACATGATGCTTACACCAAATGAAGACGGCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCTCCGACCAAGCCCACCGCCAAATATTCGACCACTATGCCTCTCACAATTTCTTACCGGACTACTTCCTTCACGGGCCTGGGCCCACAACAACAACAACAACCAACACTGATTTCACTCACCAGCAACACTTCAACCCACAAGCCCATCACACCTTTTTTGATCCACGCGCCTACCAGGGCGCGTCCTCAAGTTCCTATCCTCCTCCACACCCTTCCATGCTCTCACTTGACCCCTTGCCTCATGTCAACTCCGGGCCTGGGCCTGGGCCTGGACACGGGTTTCTCATGGTGCCTAAATCTGATGATATGGGCCGGCCAATGGACTTTGTGGGCTCGCGACTCGGGCTCAACCTTGGAGGACGAACTTATTTTTCGTCGTCCGAGGATGACTTTGTGAGCCGACTTTACCGCCGGTCCAGGCCAGGGGAACCGAGGTCGAGCGCGTCGTTGAACTCGCCTCGGTGCCAGGCGGAGGGATGCAATGCTGATCTGTCACAGGCGAAGCACTACCACCGGCGCCATAAGGTGTGTGAGTTTCACTCAAAGGCTTCCACCGTCATCACTGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTTCATCTTCTTTCTGAATTCGACAATGGAAAACGTAGCTGTAGGAAGAGATTGGCAGATCATAATCGTCGAAGAAGAAAAACTCAAAATCCAACTCAAGAAATACCCAAATCTCAATTTAGTTTCGATAATGTTGCAATATCCCCATCAGACTCCGGAGCTCAATCATCGTCGTCGGTGACTGTGGCGGTGTCGCCGCCGGATTATTTCCGGCAAAGGCCATACCAAAGCACAAGCCCTTCAACAACTTCAAGTTCACTGTTTTTCTCAAGCGGGTAG 972 0.5298 MLDYEWGNPSNMMLTPNEDGSSSSSAAAAASDQAHRQIFDHYASHNFLPDYFLHGPGPTTTTTTNTDFTHQQHFNPQAHHTFFDPRAYQGASSSSYPPPHPSMLSLDPLPHVNSGPGPGPGHGFLMVPKSDDMGRPMDFVGSRLGLNLGGRTYFSSSEDDFVSRLYRRSRPGEPRSSASLNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVITAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQNPTQEIPKSQFSFDNVAISPSDSGAQSSSSVTVAVSPPDYFRQRPYQSTSPSTTSSSLFFSSG* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0131 323 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
Lan12g0131 323 SUPERFAMILY SBT domain 183 263 IPR036893 GO:0003677|GO:0005634
Lan12g0131 323 MobiDBLite consensus disorder prediction 10 31 - -
Lan12g0131 323 Pfam SBP domain 185 258 IPR004333 GO:0003677
Lan12g0131 323 MobiDBLite consensus disorder prediction 300 323 - -
Lan12g0131 323 MobiDBLite consensus disorder prediction 1 32 - -
Lan12g0131 323 Gene3D - 176 246 IPR036893 GO:0003677|GO:0005634
Lan12g0131 323 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 102 307 IPR044817 GO:0003677
Lan12g0131 323 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 102 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0131 Lan-Chr12 1516889 1519630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0131 1 232 SBP-box Gene Family AT1G02065 43.651 6.15e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan12g0131 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0131 - - gmx:100778566 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0131 12 1516889 1519630 Lan13g1164 13 17204054 17205201 PCT