Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0119 ATGCATGTGAAAAATGAGGAAGAGTGTTATATAAAGAAAGGACCATGGAAAGCAGAAGAAGATGAAGTGTTACTGAATCATGTCAACAAGTATGGTCCTAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCATAGGACCGGCAAATCTTGTCGTCTTCGTTGGGTCAATAAGCTTCAACCTAATCTTAAGAATGGATGCAAGTTTTCAGTAGAAGAAGAGAGAGTGGTAATAGAGTTGCAGGCAGAAATTGGGAACAAATGGGCCAAAATTGCATCTTATTTGCAAGGAAGAACAGATAATGATGTGAAGAATTTCTGGAGCAGTAGGCAAAAGAGGCTAGCTAGGATTCTGCACACAACAACATGCACTTCCAAATCACAAAAGAATAAAACCAAAGTTTCTGAAGTTCAAGATGGTTTCACTTTGGAGGCTTCTAAGCTAAGTTCTTCAATGGAAGGGGAATCATCATCAATAATGTCTCAGCAGTCATACTCATTATCCTTCAATCAGAATTCTGAGTTCATCAAAATGGTGCCACTACCTAGTTCTGACATAAATCATGCTGAACAAGAGTTTATTACCCCTTTTGAGAGTTATAAAAACACTGAACAAATTTCATTCCCTCAGGTTCCAGAACTCAAGACTGATATTACATTCTCAATGGAAAGCCAAGATCTTTTGGCAAGAATTGATGAGCCAAATTTCATTGATGTATTTGACCCTATTCATGCATCATCTGAGTATGAAATAGGTGTTGAACTTCCCATTGGTTTACCTTTCTTTGAGCCATTATCAGGAAATAGTGGAATTGGGACAAGGGATAGAGTTGAAAACTCCAAAAACAGTGACAGCTTCTTTGATGATTTTCCAGTGGACATTTTTGATGATATGGAACAACCTACTAGCCCTTCTAAGCTTTGA 927 0.3819 MHVKNEEECYIKKGPWKAEEDEVLLNHVNKYGPRDWSSIRSKGLLHRTGKSCRLRWVNKLQPNLKNGCKFSVEEERVVIELQAEIGNKWAKIASYLQGRTDNDVKNFWSSRQKRLARILHTTTCTSKSQKNKTKVSEVQDGFTLEASKLSSSMEGESSSIMSQQSYSLSFNQNSEFIKMVPLPSSDINHAEQEFITPFESYKNTEQISFPQVPELKTDITFSMESQDLLARIDEPNFIDVFDPIHASSEYEIGVELPIGLPFFEPLSGNSGIGTRDRVENSKNSDSFFDDFPVDIFDDMEQPTSPSKL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0119 308 SMART sant 12 62 IPR001005 -
Lan12g0119 308 SMART sant 66 114 IPR001005 -
Lan12g0119 308 ProSiteProfiles Myb-like domain profile. 12 60 IPR001005 -
Lan12g0119 308 MobiDBLite consensus disorder prediction 274 308 - -
Lan12g0119 308 Gene3D - 12 65 - -
Lan12g0119 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Lan12g0119 308 CDD SANT 69 108 IPR001005 -
Lan12g0119 308 CDD SANT 15 60 IPR001005 -
Lan12g0119 308 Gene3D - 68 141 - -
Lan12g0119 308 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Lan12g0119 308 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan12g0119 308 PANTHER TRANSCRIPTION FACTOR DUO1 4 307 - -
Lan12g0119 308 Pfam Myb-like DNA-binding domain 13 58 IPR001005 -
Lan12g0119 308 Pfam Myb-like DNA-binding domain 69 108 IPR001005 -
Lan12g0119 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0119 Lan-Chr12 1376411 1378363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0119 1 305 MYB Transcription Factor Family AT3G60460 48.438 2.83e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan12g0119 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0119 K09422 - gmx:100818656 370.933