Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0112 ATGGAACACAAAAATGATACCTTGAGTTTGAGTTTGAGTTTGAGATTTGGAGCTGCTGAAAATGCTAATAATAATAATAGTAATAGTAATAGTAATAATTTCATGCATCAATCTCTTCCAAACCATAGAGTTTCTTTTAATACATTGTTTCATTTTCCTGATCGAACCTCCGAGACGCGCTCGTTCTTCCGTGGAATTGACGTGAATGCAGCTCCGCCGCCGTCATTGACGGCGGCTACCGGCGGCGACGATGAGAACGGAGTTTCGTCTCCTAACAGCACGGTGTCGAGTATCAGTGGAAAGCGGAGTGAGAGAGAAGGCAATGGAGATGACGCGAATGCGGTGGAGAGGGCGTCATGTTCTCAAGGTGGTGGAAGTGATGATGATGGTGGTGGTGGTGATGGTGATGCCGATGCCGATGGCGAGAATTCGAGGAAGAAGCTGAGGTTGTCAAAGGAACAAGCTTTGGTGTTGGAAGAAACATTCAAGGATCACAATACTCTCAATCCGAAACAAAAGCAAGCATTGGCAAATCAATTGAATCTGAGGCCTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAGACCGAAGTAGATTGCGAGTACTTGAAGCGATGCTGTGAGAATCTAACCGAAGAGAACAAGAGGTTGCAAAAGGAAGTTCAAGAGCTTCGGGCATTGAAATTATCTCCACACCTCTACATGCACATGAACCCTCCCACCACCCTTACGATGTGCCCTTCGTGTGAGCGTGTCGCTGTCTCATCTACATCATCGTCCTCATCATCAGCCACCATGCCCTCTGCCCTGTCTCTGGCTAACCGCAACCCACTGGGCCCTAACATCCAGCGGCCAATGCCGATCAATCCTTGGGCAGCAATGCAAATCAAACACCGGCCATTTGACGGCCCGTCTTCTCGACCGTAA 948 0.481 MEHKNDTLSLSLSLRFGAAENANNNNSNSNSNNFMHQSLPNHRVSFNTLFHFPDRTSETRSFFRGIDVNAAPPPSLTAATGGDDENGVSSPNSTVSSISGKRSEREGNGDDANAVERASCSQGGGSDDDGGGGDGDADADGENSRKKLRLSKEQALVLEETFKDHNTLNPKQKQALANQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENKRLQKEVQELRALKLSPHLYMHMNPPTTLTMCPSCERVAVSSTSSSSSSATMPSALSLANRNPLGPNIQRPMPINPWAAMQIKHRPFDGPSSRP* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0112 315 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Lan12g0112 315 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Lan12g0112 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 6 304 - -
Lan12g0112 315 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Lan12g0112 315 Coils Coil 207 237 - -
Lan12g0112 315 Gene3D - 149 199 - -
Lan12g0112 315 MobiDBLite consensus disorder prediction 73 147 - -
Lan12g0112 315 MobiDBLite consensus disorder prediction 82 102 - -
Lan12g0112 315 CDD homeodomain 145 202 IPR001356 GO:0003677
Lan12g0112 315 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Lan12g0112 315 SUPERFAMILY Homeodomain-like 128 202 IPR009057 -
Lan12g0112 315 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Lan12g0112 315 SMART HOX_1 143 205 IPR001356 GO:0003677
Lan12g0112 315 MobiDBLite consensus disorder prediction 264 285 - -
Lan12g0112 315 PANTHER - 6 304 - -
Lan12g0112 315 MobiDBLite consensus disorder prediction 264 292 - -
Lan12g0112 315 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0112 Lan-Chr12 1305343 1309143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0112 35 310 Homeobox Transcription Factor Family AT3G60390 63.103 2.71e-110 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan12g0112 HD-ZIP_N 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0112 K09338 - gmx:100810641 398.667