Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0105 ATGATGCAAACCATTTCCAGAATCAAGTTAGCCATATCCTTGTCTAGAAAAAAATCTTCAGCATGTACTAGCCCTTCCATACATGACTTCAATATTCTTAAACATTTAAATGTTGCAATTAACTACAAGAAGGCTCCTAGAATTGCTGAAGTTTTGTGGCATCTTCCAAAGGATGGTAGCATAAAAATTAACTTGGGTGGAGCTCATGGCCTTGCGAGAGGAGGTACTATATTCAGAGACCATAAGGGGGATTTTCAAACCTGCTTTGCAATATACTTTGACATACAAGATGCTCTGTTTGCTAAGCTCAATTATGATATTCTAGCTATTGAACTTGCTTACAAGAAAGGTCTAGTATTTTCATTATCATCCAAAAACAAGGCTACAAAAATATCATGGGATTTTTCTTCTTTGGAATCCATTAACCACTACTTTGAACATGATTCTGATATTCTCATAACTACTTCCTATGATCCAATTCAAAGTCCTACCTCCGACTCTAGTTCTTCCAAAATTGTTAGTTACTTGGACACTACCAATGAAGAGAAAGCGTCAAACAAGGCACGTGTATTGAACGCGCCACCAATGTGGAAGCACTACCGGGGTGTGAGGCGTAGGCCGTGGGGGAAGTTCGCAGCGGAAATAAGGGATCCAAAGAAGAATGGTGCAAGAGTGTGGCTTGGTACTTACGACACGGAAGAGAAAGCTGGCTTAGCTTATGATAGAGCTGCCTTCAAAATACATGGTAGAAAGACGAAGCTCAATTTTCCTCATCTCATTGGCTCTGACACAAACTCGGAGCCAATGAGAGTGATAGTCGCTCCTAAGGTGAATTCGCTAGAGCCTTATTCGCCACCTTTATTTAATGGTTTAGATCAGTTTAAAGGTTCAAATAGGAGAGAAAACCTAACAAGTTTGTTAAATAGGTTAGCCAGAAATAGAAGCCAAGTGGTGCAATTGTTTGAAATGGGTTCAGTGGAAAAAGATTTTGATGCTGATCAATGGCTGAATCAGTTGAAGTGTGTTGAACGATTTTAG 1038 0.396 MMQTISRIKLAISLSRKKSSACTSPSIHDFNILKHLNVAINYKKAPRIAEVLWHLPKDGSIKINLGGAHGLARGGTIFRDHKGDFQTCFAIYFDIQDALFAKLNYDILAIELAYKKGLVFSLSSKNKATKISWDFSSLESINHYFEHDSDILITTSYDPIQSPTSDSSSSKIVSYLDTTNEEKASNKARVLNAPPMWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAGLAYDRAAFKIHGRKTKLNFPHLIGSDTNSEPMRVIVAPKVNSLEPYSPPLFNGLDQFKGSNRRENLTSLLNRLARNRSQVVQLFEMGSVEKDFDADQWLNQLKCVERF* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0105 345 SMART rav1_2 199 263 IPR001471 GO:0003700|GO:0006355
Lan12g0105 345 PANTHER DNA-BINDING DOMAIN 132 317 IPR044808 GO:0003700|GO:0009873
Lan12g0105 345 ProSiteProfiles AP2/ERF domain profile. 199 257 IPR001471 GO:0003700|GO:0006355
Lan12g0105 345 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 132 317 - -
Lan12g0105 345 CDD AP2 198 259 IPR001471 GO:0003700|GO:0006355
Lan12g0105 345 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700|GO:0006355
Lan12g0105 345 PRINTS Ethylene responsive element binding protein signature 223 239 IPR001471 GO:0003700|GO:0006355
Lan12g0105 345 Pfam AP2 domain 199 249 IPR001471 GO:0003700|GO:0006355
Lan12g0105 345 Gene3D AP2/ERF domain 198 258 IPR036955 GO:0003700|GO:0006355
Lan12g0105 345 SUPERFAMILY DNA-binding domain 199 258 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0105 Lan-Chr12 1199823 1202403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0105 199 302 AP2-EREBP Transcription Factor Family AT2G44840 61.538 4.27e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan12g0105 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0105 K09286 - gmx:100527194 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0105 12 1199823 1202403 Lan1g0943 1 20103384 20104136 LSH