Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0104 ATGGCTTCTAAAATATCATGGGATTTTTCTTCTATGGAATCCATTAACCACTACTTTGAACATGATTCTGATATTCTCATAACTAGTTCTTATGATCCCATTCAAAGTCCTACCTCCGACTCTAGTTCTTCCCAAATTGTTAGTAATATGGAAACTACCAATGAAGAGAAAGTATCAAACGAGACGTGTGTAGTGAAGGCGCCACCAACGTGGAAGCACTACCGGGGTGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAAATAAGGGATCCAAAGAAGAATGGTGCAAGAGTGTGGCTTGGTACTTACGACACAGAAGAGAAAGCTGGCTTAGCTTATGATAGAGCTGCTTTCAAAATACGTGGTAGAAAGGCTAAGCTCAATTTTCCTCATCTCATTGGCTCCGACACAAATTCAGAGCCAATGAGAGTGATAGTCGCTTCTAAGATAAATTCGCTAGAGCCTTATTCACCACCTTTATTTAATGGTTTAGATCGGTGTCAAGGATCAAAGAGGGGAAAGAACCTAACAAATTTGTTGAATAGATTAGCCAGAAATAGAAGCCGAGTAGTGCAATTGTTTGAAATGGGTTCGGTGGATAAAGATTTGATGCTGATCAATGGCTGGATAAGTTGA 639 0.4163 MASKISWDFSSMESINHYFEHDSDILITSSYDPIQSPTSDSSSSQIVSNMETTNEEKVSNETCVVKAPPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAGLAYDRAAFKIRGRKAKLNFPHLIGSDTNSEPMRVIVASKINSLEPYSPPLFNGLDRCQGSKRGKNLTNLLNRLARNRSRVVQLFEMGSVDKDLMLINGWIS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0104 212 PANTHER DNA-BINDING DOMAIN 6 191 IPR044808 GO:0003700|GO:0009873
Lan12g0104 212 MobiDBLite consensus disorder prediction 31 55 - -
Lan12g0104 212 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Lan12g0104 212 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Lan12g0104 212 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Lan12g0104 212 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Lan12g0104 212 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Lan12g0104 212 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Lan12g0104 212 CDD AP2 72 133 IPR001471 GO:0003700|GO:0006355
Lan12g0104 212 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Lan12g0104 212 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 6 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0104 Lan-Chr12 1189012 1189810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0104 73 145 AP2-EREBP Transcription Factor Family AT2G44840 79.452 3.40e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan12g0104 AP2 8.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0104 K09286 - gmx:100527194 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0104 12 1189012 1189810 Lan8g0127 8 2041464 2043255 PCT