Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0088 ATGCCTCCAAGAACGGTTAAGAGAGGTGGTTCAGCGAGTGGTAGAAAGAGGGGTGGCAGAGGGACTCCAACAAAGGCTTCACAGAAGGATCAACATGAAGAAGTTGTGAAGGTTGAAGAAGAAAAGCTGGTTATTGAAGAAGAACCCAAGGTTGAAGATAAGTCTATTGATATGAACCAAAAGGTTGCTGAAGCTGATGAAGAACAACATGTAGGCCATGTGTTTGATGAATTGCCTGTGGTGAAAAGTAATGAAGAGGCGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACAATTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACCAGATGAGGTTCATGAAGTAGAAGAGGATGTAGAAGTAGAGCCAGAAGAAAATGTTGGTGAAGAAGAGGTTGATACCGGTGACGAAGAAGTTGAATATGTTCATGATGTACTCGAAGGTGAAGAGGATGATGAGCATGCTGGTGAGGAGCATGAGCATGCTCAGATGGATGATGTGGAGGAAGAACACCGTGAAGTTGTAAAAGAGAGGCGAAAGCGGAAAGAATTTGAAGTGTTTGTTGGGGGGCTAGACAAGGATGCCACTGAAGATGATCTGAAGAAGGTTTTCAGTGTTGTTGGGGTGGTTACCGAAGTCAGGCTAATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTTTTGCGCTTTGAAACTGTCGAACAAGCAAAGCGAGCTGTAGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACGATGTGGTGTTACTCCTAGTCAGGACAGTGATACTCTCTATTTGGGTAACATATGCAAGACATGGACTAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACAAACGTTGAGGATGTGACATTAGTAGAAGATAGTAATGATAAAGGAATGAGCCGTGGATTTGCATTTTTGGAATTTCACTCCCGCTCAGAAGCTATGGATGCCTTTAAGCGACTTCAGAAGAGAGATACTGTATTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAGACTTTGTTTATTGATGCATTGCCTCCTTCGTGGGATGAAGATTATGTTCGGGATCTTCTTAAGAAATATGGGGAGATTGAAAAGATTGAGCTTGCCAGGAATATGCCAGCTGCTCGCAGGATGGACTATGGATTTGTTACATTTGGCACACATGAAGCTGCTGTAAGGTGTGCTGAAAGCATCACTGGTACGGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTTAGGGCTAGATTGTCAAGGCCACTTCAGAGAGGCCATGGAAGACATGTTAGTCACGGGGACTACCGTTCAAGTCGCGGATCTGGATTAATGCGAAGGCCTTCATGGAGCCGACCTGCACCGCGTAGTTTCCCTCCTCCCCGTGGGGTTAGAGGAAATGGAAGTCGTCTTCCGCCAGTCAGGCCTATTAGTATGAGAGATAGACGTCCTGTCATGTCCATACCAGTAAGAAGTAGGCCGGTGGATCCTCCGGCTAGATCCTATGATAGCAGACAGGCTGCTCCTGCATATCCAAGAAGTAGCATTAAGAGAAATTACAGTCGACATGAGGATCTGCTACCTCCAAGAAGAGTTGCTGCAGATTATGGCTCAAGAGTGGTCTCTGAGAGACGCCCATCTTACAGGGATTACCCAGCCCGTGGCCCTAGCTACTCTGATCTCCCTAGAAGTACATCTCATGCTGCACCAAGGAGAGGTTATGTGGATGATGGCTATGGCCAAAGGTTTGAGAGGACTCCACCTCCTCCTCCTTCTCATTCAAGTTACCGTGAAGGACGGCCTCGTGATTATGATACTCTGTCTGGGTCAAAGCGTTCTTATGCTGCCATAGATGATGTTCCTCCAAGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTGAGCTATGAATACGATGGTACTGCTTCACAGTATGGAGATGCTTATGGTGATAGTAGACTTGGAAGGTCTAGTCTGGGATATGGTAGCAGCAGCAGAAGTTCTATTTCTGGTCAAGATTCACATGGAATGTATAGCAGCCGACAGGGCATGAGTTACGATGGAGGTTCTTTTGGTGGTAGTGATGTTGGTGGTGGCATGTACTCGTCAAGTTATGGTGGTGATTACATCTCTCGTGGAAGTGATGTTGGTGGCAGCTCGTATTCATCAACGTATTCTGGAAGGGGTACGGGTAGTGGTAGCAGTTACATGGGTGGTGGTGGATCTGGGTCATATTATTGA 2364 0.4514 MPPRTVKRGGSASGRKRGGRGTPTKASQKDQHEEVVKVEEEKLVIEEEPKVEDKSIDMNQKVAEADEEQHVGHVFDELPVVKSNEEAVKESIDEYEKDEQLDLEDNDPEYEPEEYGGVDYDEKEIEPDEVHEVEEDVEVEPEENVGEEEVDTGDEEVEYVHDVLEGEEDDEHAGEEHEHAQMDDVEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLKKVFSVVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKRCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDVTLVEDSNDKGMSRGFAFLEFHSRSEAMDAFKRLQKRDTVFGVDKPAKVSFADSFIDPGDEIMAQVKTLFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRMDYGFVTFGTHEAAVRCAESITGTELGEGDKKAKVRARLSRPLQRGHGRHVSHGDYRSSRGSGLMRRPSWSRPAPRSFPPPRGVRGNGSRLPPVRPISMRDRRPVMSIPVRSRPVDPPARSYDSRQAAPAYPRSSIKRNYSRHEDLLPPRRVAADYGSRVVSERRPSYRDYPARGPSYSDLPRSTSHAAPRRGYVDDGYGQRFERTPPPPPSHSSYREGRPRDYDTLSGSKRSYAAIDDVPPRYADTGARQSRARLSYEYDGTASQYGDAYGDSRLGRSSLGYGSSSRSSISGQDSHGMYSSRQGMSYDGGSFGGSDVGGGMYSSSYGGDYISRGSDVGGSSYSSTYSGRGTGSGSSYMGGGGSGSYY* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0088 787 CDD RRM_SF 284 349 - -
Lan12g0088 787 MobiDBLite consensus disorder prediction 753 787 - -
Lan12g0088 787 MobiDBLite consensus disorder prediction 756 787 - -
Lan12g0088 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 366 IPR000504 GO:0003723
Lan12g0088 787 MobiDBLite consensus disorder prediction 1 37 - -
Lan12g0088 787 SUPERFAMILY RNA-binding domain, RBD 203 346 IPR035979 GO:0003676
Lan12g0088 787 PANTHER RNA RECOGNITION MOTIF 1 787 - -
Lan12g0088 787 SUPERFAMILY RNA-binding domain, RBD 374 483 IPR035979 GO:0003676
Lan12g0088 787 SMART rrm1_1 283 362 IPR000504 GO:0003723
Lan12g0088 787 SMART rrm1_1 380 455 IPR000504 GO:0003723
Lan12g0088 787 SMART rrm1_1 203 276 IPR000504 GO:0003723
Lan12g0088 787 Gene3D - 283 365 IPR012677 -
Lan12g0088 787 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 787 - -
Lan12g0088 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Lan12g0088 787 CDD RRM_SF 204 275 - -
Lan12g0088 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 379 461 IPR000504 GO:0003723
Lan12g0088 787 MobiDBLite consensus disorder prediction 445 669 - -
Lan12g0088 787 MobiDBLite consensus disorder prediction 167 189 - -
Lan12g0088 787 MobiDBLite consensus disorder prediction 173 189 - -
Lan12g0088 787 MobiDBLite consensus disorder prediction 97 155 - -
Lan12g0088 787 MobiDBLite consensus disorder prediction 699 723 - -
Lan12g0088 787 Gene3D - 168 282 IPR012677 -
Lan12g0088 787 Gene3D - 371 487 IPR012677 -
Lan12g0088 787 MobiDBLite consensus disorder prediction 85 155 - -
Lan12g0088 787 CDD RRM_SF 381 455 - -
Lan12g0088 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Lan12g0088 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 381 446 IPR000504 GO:0003723
Lan12g0088 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 349 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0088 Lan-Chr12 976269 981678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0088 204 446 Eukaryotic Initiation Factors Gene Family AT3G16380 26.255 1.58e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0088 - - aprc:113850151 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0088 12 976269 981678 Lan1g0928 1 19984692 19989407 LSH