Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0080 ATGTTCCGCCGCGCAACCACCCTCCTCCGCCGTCCCCTTAACGCCGCCGCATCACGTCGTTTCTCCACCGATCTCCCATCTGAAACCGCCGCTGATAGCAGTTTCGTTAAGGCATGGAAGAAAGCGAGTCCAACCATCGATCCACCAAAGACACCACTTTCATATCTAAAGCCACGTCCTTCAATTCCTTCTTCTCTTCCTACCAAACTCACTGTTAATTTTGTTCTTCCTTATTCTTCTGAATTGTCTTCCAAAGAGGTGGACATGGTTATAGTACCAGCAACAACTGGACAGATGGGTGTTCTCCCCGGACACGTAGCAACAATTGCAGAGTTGAAACCCGGAGTCTTATCCGTACACGAAGGCAACGACGTGACCAAGTATTTTGTCAGCAGCGGCTTCACGTTCATCCATGCAAACTCTGTTGCCGATGTCATAGCTGTTGAAGCTGTACCACTTGATCAAATCGATGCGAACTTAGTCCAAAAGGGTCTTCAGGATTTTACTCAGAAGCTGAACTCAGCCACAACTGATTTGGAGAAAGCTGAAGCTCAGATCGGGGTCGATGTCCATAGCGCTCTCAACTCAGCTCTTTCAGGCTAA 603 0.4859 MFRRATTLLRRPLNAAASRRFSTDLPSETAADSSFVKAWKKASPTIDPPKTPLSYLKPRPSIPSSLPTKLTVNFVLPYSSELSSKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFTFIHANSVADVIAVEAVPLDQIDANLVQKGLQDFTQKLNSATTDLEKAEAQIGVDVHSALNSALSG* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0080 200 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 70 142 IPR020546 GO:0015986
Lan12g0080 200 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 1 200 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lan12g0080 200 Gene3D - 61 156 IPR036771 -
Lan12g0080 200 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 70 151 IPR036771 -
Lan12g0080 200 Gene3D - 157 199 - -
Lan12g0080 200 CDD F1-ATPase_delta 70 193 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lan12g0080 200 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 81 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lan12g0080 200 Coils Coil 165 185 - -
Lan12g0080 200 Hamap ATP synthase epsilon chain [atpC]. 68 188 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lan12g0080 200 PANTHER ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0080 Lan-Chr12 780576 783444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0080 1 200 Primary Pumps ATPases AT5G47030 71.707 7.07e-107 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0080 K02134 - gmx:100780778 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0080 12 780576 783444 Lan1g0922 1 19936597 19940445 LSH