Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0044 ATGCTTCGATTACTCTCAACTGGGTCGGATCTTTTTCGGTCATTTTCCAATCTTCATGTTATAAAATCTTTGCAACTTTTCACGCATGCCACCTGTTCGACGATTTGTCTAGCTCAAGTTAATCTTCAAAATAATCAAAATTTAGAGCAATCAAAGGATGCTACTGAAGTTTTGAGTAAATGGGGTTGTAATGATGATGATTTGACCAAGATATATTCCCGTTGCCCGTCGTTGCGCAATGCTGATGCTGCCAATGTTCAGTCCAAGCTCTCTCTGCTTAGTGGCTTAGGCATTGGGGCATCTGATCTTGTCAAGATTATCAATTGTAGGCCGCGGTTTTTTGCATCGCGGATCAACAGTCATTTCGATGAGAGGCTTTCCTATCTTACGTCATTGTTCGAGTCGAAGGAGGTGCTTCATAAGGCCATTGTGAGAAACCCTTCGTTGTTGCTATGCGACAATAGCTACGACATTAAAGCTACTGTTTTAATCTATGAGGGGTTGGGTGTTAAGAAGAGTGACCTGATTCAAATGCTACTTTTGCGGCCTACGCTTATTGCTAGGACGTCGTTTGATAATAAGAAGCTGGAGTTTCTAGGAAAGACAGGGCTTTCCAGGGATTCAAAGATGTATAAATATGTCGTGACGCTAATCGGTATCTCTCGAGTGGAAACGATTCGTGAGAAGGTAGAGAATTTCGAAAGGTTTGGTTTATCCGAGGATGAGATATTTGATCTTTTTGGGAGGAGTCCTCATGTTTTGACCCTGTCAACTAATAAGGTTCAGAGGAATATGATTTTCATTTTGGGCACAATGAAGTTTGAAGCTAAGATAATCCTAAAGTACCCACATCTCTTGTATGTTAATCTGGATACTGTTTTGAAGCCACGGGTGCTTCTAGCAATGAGGATACGAGATATGGGTGCTGAGATGAAAATCACGGAATCCACAATACTTCGCACATTGAGAATGACAGAAGAGAGGTTTTTAAATTTGTTTGTCAAATGTCATCTGAAGGAAGTTGCCGATGAATTAATGGAATTCTATAAAAGGACAAAAGAGGCGAAGAGATTAGCACAGTCATCAAAGAAGTTTATTCATAAAGGTTTCCCTTTCTGA 1119 0.4039 MLRLLSTGSDLFRSFSNLHVIKSLQLFTHATCSTICLAQVNLQNNQNLEQSKDATEVLSKWGCNDDDLTKIYSRCPSLRNADAANVQSKLSLLSGLGIGASDLVKIINCRPRFFASRINSHFDERLSYLTSLFESKEVLHKAIVRNPSLLLCDNSYDIKATVLIYEGLGVKKSDLIQMLLLRPTLIARTSFDNKKLEFLGKTGLSRDSKMYKYVVTLIGISRVETIREKVENFERFGLSEDEIFDLFGRSPHVLTLSTNKVQRNMIFILGTMKFEAKIILKYPHLLYVNLDTVLKPRVLLAMRIRDMGAEMKITESTILRTLRMTEERFLNLFVKCHLKEVADELMEFYKRTKEAKRLAQSSKKFIHKGFPF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0044 372 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 Pfam mTERF 56 185 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 Pfam mTERF 125 330 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 PANTHER CGI-12 PROTEIN-RELATED 18 372 IPR003690 GO:0003690|GO:0006355
Lan12g0044 372 Gene3D Transcription termination factor 3, mitochondrial 111 350 IPR038538 -
Lan12g0044 372 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 18 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0044 Lan-Chr12 392749 394347 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lan12g0044 mTERF 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0044 K15032 - gmx:100799629 483.796