Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0043 ATGGAAAACCATTTCTTTCCAAATTCCATGCACTTTGAACCTTCACCACATTCTTCAATACCAATGGAAACTCAACAAATTCTTCTGAATTCTTCTTCTCATCAAAACCAAGATTGCTTTTACACTGAACCCAACATTTCCAATGACAATATAGCAATAAGAGAATTCATTGGAAAGTTAGGAACTTCTTACATGAATGGCAATAATAATAGCATTAAAAGCACCCCTTTGAACTTGAATTCCAGTGTAGAAGGATTCACAACAGATCGAGGCTTCGCCGCGAGGACCGCGAAGTTTTCTTGCATTGGAAGCAAGAGTTTCAATGGCAGAAGCAGAAGCAACAAGTTGGTGATGAACAATGATGAATTAGCACAAAGATCTGATCAAGTAATGGAAAATGTGAAGCTTTTGAGTAGGGTTTCAAGTAGCCCATCATTGAAAACAATAATAGTTGGGTCTCAAATGGAAGTGATGAATTCTCAAGATGAATCTATGATCTTGGAGCATAATCTGAATGGAGATATTGGTGCCAAATCTTCACCTGATATGAATTCAAGGAAAAGAAAAGCTTCTGCTAAAGGAAAAGCCAAAGAAAATTTGAGTTTGATCACTAATAAGGGCGTTGAAGGTAGCGAAGACTCAAATGCGAAGCGCAATAGGTCGAATGAAGGTGAAGGGAATGAAAATGGTGTTGTAAAGGTTGAGGAAGAAACCAAAGGAGATACTAGTAACTCTAAACCTATTGACCCTATGAAAGATTACATTCATGTTAGAGCAAGAAGGGGTCAAGCTACCGATAGTCATAGTCTTGCAGAACGTGCACGTAGGGAGAAAATCGGCGAAAGGATGAAGCTTCTACAAGATCTAGTACCAGGTTGCAATAAGGTGATTGGTAAAGCACTCATGCTTGATGAAATTATAAACTATGTACAATCATTGCAGCATCAAGTTGAGTTTTTGTCAATGAAATTGTCTTCTGTTAATACCAAGATGGATTATAATATTGAGAGTCTTATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCAAATCAAACATTCCAATTAGATTCATCAGCACAAGCCTTTTATGGGCACCAGAATCAGCAAGACTCAGCAATTCAATATAACATTCCTAATGGAAATGTGACTCATAGCTTAGTTGACACATTAGATACTACTTTATGCCACATTAATGGATTTAATGAAGGTGGTTCTCAGTATCCATTAACATTCTGTGAGGATGATCTGAACACCATTGTTGAGATGGGATTTGGTCAAATTGCAAACATCAAAACACCAATGCAATCTCCAAGTTTCAATGGTTCAAATCAAGTATCACACATGAAACTTGAGCTATGA 1365 0.3678 MENHFFPNSMHFEPSPHSSIPMETQQILLNSSSHQNQDCFYTEPNISNDNIAIREFIGKLGTSYMNGNNNSIKSTPLNLNSSVEGFTTDRGFAARTAKFSCIGSKSFNGRSRSNKLVMNNDELAQRSDQVMENVKLLSRVSSSPSLKTIIVGSQMEVMNSQDESMILEHNLNGDIGAKSSPDMNSRKRKASAKGKAKENLSLITNKGVEGSEDSNAKRNRSNEGEGNENGVVKVEEETKGDTSNSKPIDPMKDYIHVRARRGQATDSHSLAERARREKIGERMKLLQDLVPGCNKVIGKALMLDEIINYVQSLQHQVEFLSMKLSSVNTKMDYNIESLISKDIFQSNNSLANQTFQLDSSAQAFYGHQNQQDSAIQYNIPNGNVTHSLVDTLDTTLCHINGFNEGGSQYPLTFCEDDLNTIVEMGFGQIANIKTPMQSPSFNGSNQVSHMKLEL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0043 454 PANTHER BHLH TRANSCRIPTION FACTOR 71 447 - -
Lan12g0043 454 MobiDBLite consensus disorder prediction 211 243 - -
Lan12g0043 454 CDD bHLH_AtBPE_like 253 338 - -
Lan12g0043 454 MobiDBLite consensus disorder prediction 173 250 - -
Lan12g0043 454 Pfam Helix-loop-helix DNA-binding domain 267 314 IPR011598 GO:0046983
Lan12g0043 454 SMART finulus 269 319 IPR011598 GO:0046983
Lan12g0043 454 Gene3D - 260 336 IPR036638 GO:0046983
Lan12g0043 454 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 447 IPR024097 GO:0006355
Lan12g0043 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Lan12g0043 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 332 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0043 Lan-Chr12 380948 383808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0043 46 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 45.429 6.87e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan12g0043 HLH 9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0043 - - lang:109362001 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1817 11 34815592 34822442 Lan12g0043 12 380948 383808 PCT
Lan13g1055 13 15716587 15720043 Lan12g0043 12 380948 383808 PCT
Lan12g0043 12 380948 383808 Lan11g1817 11 34815592 34822442 PCT
Lan12g0043 12 380948 383808 Lan13g1055 13 15716587 15720043 PCT