Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0040 ATGGAAAATGATGGTAGGGTTGATGATCTTAAGATACCATTGTTGGAGACTGAAGAAGAAGAATGTGTCAAAGATAGAACAGTTTTGTTTCAAATAAGTGATATAAAGTGTGCTTCTTGTGTAAACTCTGTTGAATCTGCAGTTAGAAACATTAATGGGGTCAAAAGTATCATGGTGTCACCACTTGATGGTAGAGCAGCAATCAAATATGCCCCCAAGTTCATAACTGCGAAAAAAATAAAGGAAACGATAGAAGATTCTGGCTTTAGAGTTGACAATGTCCAAGAGCAAAACATATCGGTATGCCGAGTCAGGATTAAGGGAATGACATGCACAAGCTGCTCTGAGTCTATTGAGAATGCACTTCAAATGGTTGATGGAGTGAAAAAGGCAATAGTTGGTCTAGCTTTAGAGGAGGCAAAAGTGCACTTTGATTCTAACCTCACCAATGCTGACAAGATAATCAAAGCTATAGAAGGTGGTGGTTATGGAGCAGATCTTATTAGCTTTGGGAATGATGTGAACAAAGTGCATCTAAAAGTTGAAGGGGTTGATTCTGCAAAGGACATTGATGTAATAATGTCTTGTATCGAGTTAGCGGTAGGTGTGAATCATGTTGAAATGGATTTGACAGAACATACAGTTACAGTTGGCTATGATCCAGACTTTACAGGTCCAAGAACTCTCATTCATTGCATTCAAGCAGCTAGCTGTGGCCCCAAGATATATCAAGCAAGCTTATACTCTCCTCCAGGCCAAATAGGAAGGGATAAGGTGAACGAAATTCGTATGTATAGGAACCAGTTTTTGTTAAGCTGCCTATTTTCTGTACCTGTTTTTGTATTTGCCATGGTGCTTCCCATGTTTCCTTCTTGTGACAAGTGGTTAAACTATAAGATCCACAATATGCTCACTCTTGGGTTGCTTTTAAGATGGGTCCTTAGCACACCTGTCCAGTTCATAGTTGGAAAAAGGTTTTATATTGGTTCATATCATGCACTGAGGCGAAGATCTGCTAACATGGATGTGCTGGTTGCATTAGGCACTAATGCTGCTTATTTTTACTCGATATATGTTTTGATAAAAGCATCGACTTCAGATACATTTCAAGGACAGGATTTCTTTGAGACCAGTTCCATGTTGATATCCTTTATTCTATTAGGAAAATATCTGGAGATTATGGCAAAAGGGAAAACATCAGATGCTTTAGCAAAGCTGACAAAACTTGTTCCTGATAAAGCTTATTTGATAGAAATCGATACTGGTGGAAACATCATCACAGAGACAGAAATTGACACTCAACTTATACAAAAGAATGACATAATTAAAATTGTTCCTGGTGCCAAAATTCCCGTTGATGGTATTGTTATAAAAGGACAGAGCTATGCTAATGAAAGCATGATCACTGGGGAGGCAAGACCTGTCGACAAAAGTCCAGGAGACAAGGTTATCAGTGGAACCATCAATGAGAATGGCTGCTTACATGTTAAAGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTGCCAAAGCCCCAGTTCAAAAACTTGCTGACGACATTTCTCGGGTTTTTGTTCCAATAGTGGTTGTTGCAGCACTCATAACTTGGCTGGGGTGGTACATTCCTGGGGAAGCTGGTATTTACCCTAAACATTTAGGACCAAAAGTAGTGGATCCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTGCTAGTTGTTGCTTGCCCATGTGCTCTGGGTCTAGCAACACCGACTGCAGTCATGGTTGCTTCGGGCATGGGTGCTTCTCTAGGTGTACTCATCAAGGGCGGAGATGCACTGGAAAAGGCACATAAGGTAAAAATTGTTGTGTTTGATAAGACCGGGACACTAACAGTTGGGAAGCCAGTGGTAGTTAGTGCAGTGCTGTTTTCTGAATTTTCTATGGAGGAGTTGTGTGACATGACAGTTTCTGTGGAGGCAAGTAGTGAACACCCAATAGCAAAAGCTGTCGTGGCACATGCAAAGAGGTTGCGCCAGAAATTTGGTTCCCGCACTGAGGATGTCCCAGATGTGAAGGACTTTGAGGTACATGTAGGAGCTGGGGTAAGTGGAAAAGTTGGCAAAAGAACAGTTTTAGTTGGAAACAAGAGACTCATGCATGCTTGTAATGTTCCAATATGTTCAGAGGTTGAGAGGTACATCTGTGAAAATGAAATTCAGGCTAGAACTTGTGTTTTAGTTTCAATTGATGGAAAGATTGCTGGAGCATTCTCTGTAAGTGACCCTGTAAAGCCCGAAGCTAAACGTGTCATATCTTTTCTCCACTCTATGGGCATCTCAAGCATCATAGTGACTGGTGATAACTTTGCTACTGCAATTGCTATTGCTAATGAAGTTGGTATCGATGAAATCTTCGCTGAGACGAATCCATTGGGAAAAGCTGATAAGGTGAAAGAATTGCAGATGAAAGGAATGACCGTGGCAATGGTTGGTGATGGAATAAATGACTCGCCGGCCTTAGTTGCAGCTGATGTTGGTATGGCTATTGGAGCTGGAACTGATATAGCTATAGAAGCAGCTGATATTGTTCTTGTCAAAAGCAGCTTGGAAGATGTAGTTACAGCCATAGATCTATCTCGAAAAAGCATGTCGCGTATTCGGCTCAATTACATCTGGGCTCTCGGCTACAACATTCTAGGTATGCCAATTGCTGCAGGGGTTTTGTACCCTTTTACCGGTATCAGATTACCACCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTTAGTGTAGTTTCTTCCTCTCTTTTGCTGCAGTTCTACAAAAAACCCTTGCATATAGAATAA 2865 0.4126 MENDGRVDDLKIPLLETEEEECVKDRTVLFQISDIKCASCVNSVESAVRNINGVKSIMVSPLDGRAAIKYAPKFITAKKIKETIEDSGFRVDNVQEQNISVCRVRIKGMTCTSCSESIENALQMVDGVKKAIVGLALEEAKVHFDSNLTNADKIIKAIEGGGYGADLISFGNDVNKVHLKVEGVDSAKDIDVIMSCIELAVGVNHVEMDLTEHTVTVGYDPDFTGPRTLIHCIQAASCGPKIYQASLYSPPGQIGRDKVNEIRMYRNQFLLSCLFSVPVFVFAMVLPMFPSCDKWLNYKIHNMLTLGLLLRWVLSTPVQFIVGKRFYIGSYHALRRRSANMDVLVALGTNAAYFYSIYVLIKASTSDTFQGQDFFETSSMLISFILLGKYLEIMAKGKTSDALAKLTKLVPDKAYLIEIDTGGNIITETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLHVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADDISRVFVPIVVVAALITWLGWYIPGEAGIYPKHLGPKVVDPFELALQFAISVLVVACPCALGLATPTAVMVASGMGASLGVLIKGGDALEKAHKVKIVVFDKTGTLTVGKPVVVSAVLFSEFSMEELCDMTVSVEASSEHPIAKAVVAHAKRLRQKFGSRTEDVPDVKDFEVHVGAGVSGKVGKRTVLVGNKRLMHACNVPICSEVERYICENEIQARTCVLVSIDGKIAGAFSVSDPVKPEAKRVISFLHSMGISSIIVTGDNFATAIAIANEVGIDEIFAETNPLGKADKVKELQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVVTAIDLSRKSMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIE* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0040 954 SFLD Haloacid Dehalogenase 610 886 - -
Lan12g0040 954 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 10 952 - -
Lan12g0040 954 SUPERFAMILY HMA, heavy metal-associated domain 97 170 IPR036163 GO:0046872
Lan12g0040 954 SUPERFAMILY Calcium ATPase, transduction domain A 428 514 IPR008250 -
Lan12g0040 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 376 620 IPR023298 -
Lan12g0040 954 Gene3D - 24 97 - -
Lan12g0040 954 PRINTS Copper-transporting ATPase 1 signature 27 52 - -
Lan12g0040 954 PRINTS Copper-transporting ATPase 1 signature 53 76 - -
Lan12g0040 954 PRINTS Copper-transporting ATPase 1 signature 124 145 - -
Lan12g0040 954 SUPERFAMILY HMA, heavy metal-associated domain 26 95 IPR036163 GO:0046872
Lan12g0040 954 Pfam E1-E2 ATPase 411 604 - -
Lan12g0040 954 ProSitePatterns Heavy-metal-associated domain. 106 135 IPR017969 GO:0046872
Lan12g0040 954 ProSiteProfiles Heavy-metal-associated domain profile. 101 167 IPR006121 GO:0046872
Lan12g0040 954 Pfam Heavy-metal-associated domain 30 89 IPR006121 GO:0046872
Lan12g0040 954 Pfam Heavy-metal-associated domain 103 163 IPR006121 GO:0046872
Lan12g0040 954 ProSiteProfiles Heavy-metal-associated domain profile. 176 242 IPR006121 GO:0046872
Lan12g0040 954 SUPERFAMILY HAD-like 626 941 IPR036412 -
Lan12g0040 954 Gene3D - 100 170 - -
Lan12g0040 954 SUPERFAMILY HMA, heavy metal-associated domain 170 243 IPR036163 GO:0046872
Lan12g0040 954 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 341 944 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lan12g0040 954 PANTHER ATP7, ISOFORM B 10 952 - -
Lan12g0040 954 Gene3D - 171 245 - -
Lan12g0040 954 TIGRFAM TIGR00003: copper ion binding protein 30 91 IPR006122 GO:0005507
Lan12g0040 954 TIGRFAM TIGR00003: copper ion binding protein 104 164 IPR006122 GO:0005507
Lan12g0040 954 Pfam haloacid dehalogenase-like hydrolase 624 849 - -
Lan12g0040 954 ProSiteProfiles Heavy-metal-associated domain profile. 27 93 IPR006121 GO:0046872
Lan12g0040 954 CDD HMA 30 91 IPR006121 GO:0046872
Lan12g0040 954 Gene3D - 595 892 IPR023214 -
Lan12g0040 954 SFLD p-type atpase 610 886 IPR044492 -
Lan12g0040 954 Gene3D - 635 713 IPR023299 GO:0000166
Lan12g0040 954 Gene3D - 714 766 IPR023299 GO:0000166
Lan12g0040 954 CDD HMA 104 165 IPR006121 GO:0046872
Lan12g0040 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 381 912 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g0040 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 630 636 IPR018303 -
Lan12g0040 954 CDD P-type_ATPase_Cu-like 269 931 - -
Lan12g0040 954 Gene3D - 396 518 - -
Lan12g0040 954 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Lan12g0040 954 PRINTS P-type cation-transporting ATPase superfamily signature 628 642 - -
Lan12g0040 954 PRINTS P-type cation-transporting ATPase superfamily signature 760 771 - -
Lan12g0040 954 PRINTS P-type cation-transporting ATPase superfamily signature 782 792 - -
Lan12g0040 954 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Lan12g0040 954 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0040 Lan-Chr12 347160 356095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0040 29 950 Primary Pumps ATPases AT1G63440 56.512 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0040 K17686 - gmx:100793894 1594.71