Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0010 ATGGTGGAGATTGAATTTCAAGAGACTGAGGAAAATGAATGCACTGCGAAGGAAGCTTCCGATGGCTTTGAAACCGCCAGTGATGCCGAACTAGGCAGTGATGATGGTGGCGACGGAGGAGATGCGGCTCAAGAAAAACATATTGTTCGCGATGATTCCAACGATGTGTCGAATACTGAAGAATTGAAACAGAAAGGATTGGCCGAAGCAAATGAAGCAAAGCTTGAAGGGAATAATTTTTTTGGAGATGGGAAGTATGAGGAGGCACTATCACAATATGAATTTGCTTTGCAAGTTGCACCAGATGCACCTTCGTCCGTGGAAGTACGTTCGATTTGCCATTCAAACCGTGCTGTCTGCTTCCTGAAACTGGGAAAATATGAAGACACAATCAAAGAATGTACGAAAGCATTAGAACTAAATCCTGTGTACGTTAAAGCTTTAGTACGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTATGATGAGGCCATTGCTGATATGAAAAAGATCTTAGAAGTTGATCCCTTGAATGATCAAGCTAAGAAAGTCATTCGCCGACTGGAGCCCCTTGCGGCAGAAAAGAGGGAAAAGATGAAGGAAGAAATGATTGGAAAACTGAAAGAAATGGGAAATTCGGTATTGGGTCGCTTTGGGATGAGCGTGGATAATTTCAAAGCTGTGAAAGATCCAAACACTGGTTCTTATTCTATCTCATTTGAAAGATAA 729 0.4198 MVEIEFQETEENECTAKEASDGFETASDAELGSDDGGDGGDAAQEKHIVRDDSNDVSNTEELKQKGLAEANEAKLEGNNFFGDGKYEEALSQYEFALQVAPDAPSSVEVRSICHSNRAVCFLKLGKYEDTIKECTKALELNPVYVKALVRRGEAHEKLEHYDEAIADMKKILEVDPLNDQAKKVIRRLEPLAAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFER* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0010 242 Gene3D Tetratricopeptide repeat domain 38 209 IPR011990 GO:0005515
Lan12g0010 242 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 9 242 - -
Lan12g0010 242 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 9 242 - -
Lan12g0010 242 Pfam Tetratricopeptide repeat 146 177 IPR013105 -
Lan12g0010 242 MobiDBLite consensus disorder prediction 39 59 - -
Lan12g0010 242 Pfam Tetratricopeptide repeat 113 142 IPR001440 GO:0005515
Lan12g0010 242 ProSiteProfiles TPR repeat profile. 145 178 IPR019734 GO:0005515
Lan12g0010 242 MobiDBLite consensus disorder prediction 1 60 - -
Lan12g0010 242 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Lan12g0010 242 SUPERFAMILY TPR-like 69 188 IPR011990 GO:0005515
Lan12g0010 242 SMART tpr_5 70 103 IPR019734 GO:0005515
Lan12g0010 242 SMART tpr_5 145 178 IPR019734 GO:0005515
Lan12g0010 242 SMART tpr_5 111 144 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0010 Lan-Chr12 85793 89526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0010 58 201 Calmodulin-binding Proteins AT3G25230 40.132 1.49e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0010 K24926 - twl:120005124 333.183