Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1921 ATGAACAATAGAGCTAGATATCCACCTGGGATAGGGTTAGGGCGAGGTGGTGGCAGTGGCGGCGGCGCTGGTTTGAACCTGAATCCTGGGTTTCAACAAAGGCCACCTCAACAACATGTTCAGAGGCACATAATGCAGCAACAACAGTATCAGCAACAGCAACAACAACAACAACAATGGCTGAGAAGGACTCAGTTGGGTGGTAATACTAACACCAATGTGGTTGAGGAAGTGGAGAAGACTGTACAGTCTGAAGCGGTCGACGAAAGTTCACAAGATTGGAAGACGAAACTAAAAATTCCACCTGCTGATACACGCTATAGGACAGAGGACGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAGAGCATTCCAATTGCTCTTACCGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGTATTCCAGCATTGGAAAAAATTGACCAGGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACTCGAGAGTTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAATATCCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAGGAAGGGTGTTTGCATTATGAAAGACTGCTCCATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCACCAGAGTTCCAGCCTTCAATAGAGCAGCTGATTCAATTTCTTCCTGGAAACCGTCAAATCCTGATGTTTTCGGCAACCTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATACCTTCGTAAGCCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATTTTATGCTTTTGTGGAAGAGAGGCAGAAAGTTCACTGCCTGAATACTCTCTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCGGAAACTTATCTTCACAGGGTCGGTCGTTCAGGGAGATTTGGGCACCTTGGTTTAGCAGTGAACTTGATTACTTATGAGGACCGCTTCAATTTATATAGGATTGAACAAGAACTTGGTACTGAAATTAAACAAATTCCGCCACACATCGATCAAGCAATATATTGTCAGTGA 1479 0.4124 MNNRARYPPGIGLGRGGGSGGGAGLNLNPGFQQRPPQQHVQRHIMQQQQYQQQQQQQQQWLRRTQLGGNTNTNVVEEVEKTVQSEAVDESSQDWKTKLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLARKGVCIMKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGNRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1921 492 CDD SF2_C_DEAD 330 459 - -
Lan11g1921 492 SMART helicmild6 369 450 IPR001650 -
Lan11g1921 492 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 265 273 IPR000629 -
Lan11g1921 492 Gene3D - 70 322 IPR027417 -
Lan11g1921 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 319 IPR014001 -
Lan11g1921 492 SMART ultradead3 137 333 IPR014001 -
Lan11g1921 492 MobiDBLite consensus disorder prediction 1 37 - -
Lan11g1921 492 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 30 492 - -
Lan11g1921 492 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 30 492 - -
Lan11g1921 492 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Lan11g1921 492 Pfam DEAD/DEAH box helicase 143 307 IPR011545 GO:0003676|GO:0005524
Lan11g1921 492 Pfam Helicase conserved C-terminal domain 344 450 IPR001650 -
Lan11g1921 492 Gene3D - 323 492 IPR027417 -
Lan11g1921 492 CDD DEADc_DDX6 120 320 - -
Lan11g1921 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 489 IPR001650 -
Lan11g1921 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 472 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1921 Lan-Chr11 35823845 35831352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1921 120 489 Eukaryotic Initiation Factors Gene Family AT3G19760 38.441 4.75e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1921 K12614 - fve:101307921 840.106