Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1920 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTAGATTTGTTAACTCTTGAAGGGATACCTTACCATAAAAGCTGCTTCAAATGTAGTCACTGCAAGGGATATCTTACGATGAGCACTTATTCCTCAATGGATGGTGTCCTTTATTGCAAGCCACATTTTGAACAACTTTTCAAAGAATCTGGAAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCCGATAAACAGAATGATATGAATAAGGCTCCAAGTAGAGTCTCATCTATGTTCAGTGGAACTCTAGACAAATGCTCGGTTTGCTCGAAAACAGTCTATCCACTTGAGAAGATGTCACTGGAAGGGGAATGCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGTTGTCCTCTGACACATTCCTCATATGCTGCCCTTGATGGTGTCCTATACTGTAGGCACCATTTTGCACAACTTTTCATGGAGAAGGGAAATTATAACCATGTGCTTCAAGCTGCTCAAGCACATAAGAAGAATACTACTCCACCTCCTGAACCACTTGATGATGAGTCCTCAAAGCAGCCACAAGAATCTGAGGAAAAGAAACAAGATGATGAAGACTCTTGA 633 0.4076 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKSCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNDMNKAPSRVSSMFSGTLDKCSVCSKTVYPLEKMSLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAQAHKKNTTPPPEPLDDESSKQPQESEEKKQDDEDS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1920 210 Gene3D Cysteine Rich Protein 103 170 - -
Lan11g1920 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lan11g1920 210 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Lan11g1920 210 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Lan11g1920 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Lan11g1920 210 MobiDBLite consensus disorder prediction 176 210 - -
Lan11g1920 210 Pfam LIM domain 106 161 IPR001781 -
Lan11g1920 210 Pfam LIM domain 10 65 IPR001781 -
Lan11g1920 210 Gene3D Cysteine Rich Protein 5 102 - -
Lan11g1920 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 172 - -
Lan11g1920 210 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lan11g1920 210 SMART lim_4 9 61 IPR001781 -
Lan11g1920 210 SMART lim_4 105 157 IPR001781 -
Lan11g1920 210 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lan11g1920 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lan11g1920 210 CDD LIM1_SF3 6 68 - -
Lan11g1920 210 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1920 Lan-Chr11 35820110 35822483 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan11g1920 LIM 3.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1920 - K09377 gmx:100779513 363.614