Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1888 ATGATGGAGAAGCACAAGTGCAAACTTTGCTTGAGAAGCTTCTCCAATGGTAGAGCTTTGGGGGGTCACATGAGGTCTCATATGATGAACTATCCTCTTCCTACAAAGCCACAAGCTTCATCATCACGAACTATTCAACTCAGTTTCGAAGCCGATTCAGCTTCTTCATCATCTTCTGAAGAAAACAGTGACAATAATAATAATAATAATATTGTTAACAATAATGATGACAAGGGTGTTATTTGTTATGGTCTTAGAGAGAATCCAAAGAGAAGTTTTCGCCTTGAAGATCCAGAATTTTCATCTATGATCCTTCAAGATAGAGAGAGTGAAACCGAATCTTATAAGAACAGAAAATGGTATGAGACAAGTAACTATAGATCAAGAATGAGAGATGATTGTAACAATGATGAAGGTGAAGCTATGATGAAGAAGATTAAGTTATTAAACAAGGGTAGTAAGATAGAATCATGGGTTGTTGATCATGAACCTTTGATGAGTTCGGTTTCTGATGTATCAACCGAGGAAGATGTTGCATTTTGTCTCATGATGATGTCTAGGGATAACAGATGGAAGAGACAGAAGGATCAAGAACAAGAACAATTGATGAAGAATGATAGATATTATGATTATGACAAAGAAGAAGATGAAATGGAGAGATTCTCAGATGAACAATTCGAAAGTGATGCATCATCTGAAGAAGAATCTAGGTTTTCCAAGAACAAAGTACGAGGTGGAAGGTACAAATGTGAAACATGTAACAAGGTTTTTAGATCTTATCAAGCATTAGGTGGCCATAGAGCGAGTCATAAAAGGATGAAAGTGAAGATAAGTAGAGTGAATAATGAAGAACAAGAATTGGAGAATGAGAATGGTGGGAGTTTTGCTTTAATGGTTGTGGAAAAGAAAATACATGAACCGGTCTTCCAACCGAAAACCGGATCGCGACAGTGCCCTATTTGTTTAAGAGTTTTTGGTTCAGGTCAAGCACTTGGTGGACACAAAAGAACACATGTTATTGGGTCAACAACAATAATCAAATCAACACAAGTTTCAATTTCAACAAAGCATGGAAACAACTTTATAGATCTTAATCTTCCTGCTCAAGGTGATAATGGTGATGATGATATTAACCCTATTGAGAATTCTGCAGTTTCAGATGCAGATTTTGTGAAAATCCATTGA 1185 0.3629 MMEKHKCKLCLRSFSNGRALGGHMRSHMMNYPLPTKPQASSSRTIQLSFEADSASSSSSEENSDNNNNNNIVNNNDDKGVICYGLRENPKRSFRLEDPEFSSMILQDRESETESYKNRKWYETSNYRSRMRDDCNNDEGEAMMKKIKLLNKGSKIESWVVDHEPLMSSVSDVSTEEDVAFCLMMMSRDNRWKRQKDQEQEQLMKNDRYYDYDKEEDEMERFSDEQFESDASSEEESRFSKNKVRGGRYKCETCNKVFRSYQALGGHRASHKRMKVKISRVNNEEQELENENGGSFALMVVEKKIHEPVFQPKTGSRQCPICLRVFGSGQALGGHKRTHVIGSTTIIKSTQVSISTKHGNNFIDLNLPAQGDNGDDDINPIENSAVSDADFVKIH* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1888 394 Coils Coil 270 290 - -
Lan11g1888 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 338 IPR013087 -
Lan11g1888 394 ProSitePatterns Zinc finger C2H2 type domain signature. 318 338 IPR013087 -
Lan11g1888 394 Pfam C2H2-type zinc finger 247 271 - -
Lan11g1888 394 Pfam C2H2-type zinc finger 318 338 - -
Lan11g1888 394 Pfam C2H2-type zinc finger 5 28 - -
Lan11g1888 394 ProSitePatterns Zinc finger C2H2 type domain signature. 250 270 IPR013087 -
Lan11g1888 394 SMART c2h2final6 5 27 IPR013087 -
Lan11g1888 394 SMART c2h2final6 316 338 IPR013087 -
Lan11g1888 394 SMART c2h2final6 248 270 IPR013087 -
Lan11g1888 394 SUPERFAMILY beta-beta-alpha zinc fingers 4 270 IPR036236 -
Lan11g1888 394 Gene3D Classic Zinc Finger 245 338 - -
Lan11g1888 394 MobiDBLite consensus disorder prediction 219 238 - -
Lan11g1888 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 275 IPR013087 -
Lan11g1888 394 MobiDBLite consensus disorder prediction 33 73 - -
Lan11g1888 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Lan11g1888 394 MobiDBLite consensus disorder prediction 224 238 - -
Lan11g1888 394 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Lan11g1888 394 MobiDBLite consensus disorder prediction 25 73 - -
Lan11g1888 394 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 392 - -
Lan11g1888 394 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 392 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1888 Lan-Chr11 35585054 35586475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1888 2 380 C2H2 Transcription Factor Family AT3G60580 37.435 2.25e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g1888 zf-C2H2_6 1.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1888 - - lang:109360076 747.658