Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1881 ATGGATTTAAGAGGAAACATGTTTTGTCTAGGTAAAAGAGATCAAAATGGTAACAATAACAGTAACAGCTATGGTTGGGATTCATTTGAAATCACCACTTCTACTAGTTCAAACCTCATCAACGCATTCAACACCACTGCGGAGGAGAACTCCGCCGTCAACAACAGCAACGGCCGTGTAAACCATAACCACCACCACCACCGCCACCAGCCGCAACTGTATGGCGGAGATGGGTTGCACGTGGACCCACACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACACTAGTGGTGCTGCTTCCACTGTTGGTGTCTTAGCCTCTGCAGATAAGAGAGGAAAAGGTGGTGGTGGTGGCGGCGGTGGTGGGTTGAAGACGGCGTCGTCGCTTCCGAGATGTCAGGTTGAGGAATGCCACGTGGCGTTGTTGAACGCGAAGGATTATCACCGGAGGCATAAGGTTTGTGAGATGCATTCGAAGGCACCCAAAGTTATGGTGTTAGGGTTAGAGCAGAGATTCTGTCAGCAGTGTAGTAGGTTTCATGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGCAGAAGAAGATTGGTAGGTCACAATGAGAGAAGAAGAAAGAACTCACATGATTCTATTGCAAGGAATAATACTTTAGAAGGGTGTGCTTTCTCTCTTCTGTCATCTAGGAGTGACTCTTCACATTCTCCTGCTGATATCTCTATAAGATGCAGTAGCAGTGCAGCATTATGTGAATTAATAGCAGAAAACCGTGCTGCATTCATGGCTAAACAGTTTGTTCCTGAAAGAGAAAAGCATTTACACCACCATGAGTATAATTCTTTCCCACAAAAGATGTTTCACCAATAA 876 0.4543 MDLRGNMFCLGKRDQNGNNNSNSYGWDSFEITTSTSSNLINAFNTTAEENSAVNNSNGRVNHNHHHHRHQPQLYGGDGLHVDPHLMCLKLGKRHYFEDTSGAASTVGVLASADKRGKGGGGGGGGGLKTASSLPRCQVEECHVALLNAKDYHRRHKVCEMHSKAPKVMVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLVGHNERRRKNSHDSIARNNTLEGCAFSLLSSRSDSSHSPADISIRCSSSAALCELIAENRAAFMAKQFVPEREKHLHHHEYNSFPQKMFHQ* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1881 291 ProSiteProfiles Zinc finger SBP-type profile. 133 210 IPR004333 GO:0003677
Lan11g1881 291 Gene3D - 128 197 IPR036893 GO:0003677|GO:0005634
Lan11g1881 291 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 283 IPR044817 GO:0003677
Lan11g1881 291 Pfam SBP domain 136 209 IPR004333 GO:0003677
Lan11g1881 291 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 17 283 - -
Lan11g1881 291 SUPERFAMILY SBT domain 134 215 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1881 Lan-Chr11 35513941 35518907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1881 86 209 SBP-box Gene Family AT1G27370 51.880 4.62e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan11g1881 SBP 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1881 - - gmx:100806582 340.887