Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1877 ATGGAAAATGATGCTCATTCCACCAACAACACCAAAATCACCACCACTTCTTCCTCCTCCACTTCTTCATCAACAACAACAACATCTTCTAACTCTAACTCAAATTCATGCACCAAAAAAATCACCAAAAAGGGTCTTTCAAATGATTCAACAAAAGCCCTAAACTCACAAAATGGAACCAATGAGTGCAACAAGAGGAAAAGGAGTGAGAATGAAGCAATAAAGCACCCTACTTATAGAGGTGTAAGAATGAGAAATTGGGGCAAATGGGTATCTGAAATCCGTGAGCCAAGAAAGAAATCAAGGATATGGTTAGGGACATACCCTACAGCTGAAATGGCTGCAAGGGCACATGATGTTGCTGCTATAGCTATCAAAGGAAAATCAGCTTTTCTCAATTTCCCTAAATTGTCACAAGAACTTCCAAAGCCTGCAAGTACATCTCCTAAGGATATTCAAGCTGCAGCTGCAAAAGCAGCTACTACAATCTTTGAACAAGCTTCTAATAAGCATTGTGAAGTTCATGATTGTGCTGAAACTGAACTCAACCAAGTAGTGGAACAAGCTTCATCTTCAACTCTTTCATTGGATAATTCTCTAGAGTCTTCAACCTCTCCCTCTACTATAAATGATTATGATCATGATGATGATGCATTGTTTGACCTACCAGATCTTTTCCCTGATGGAAACAATGGACTTTTCTCATATTCTTCTTCTTGGCATTTATGTACAGTTTATAGTGGGTTCAAGCAAGATGAACAATATTTGTGGGAGAATTATTCATCCTAG 789 0.384 MENDAHSTNNTKITTTSSSSTSSSTTTTSSNSNSNSCTKKITKKGLSNDSTKALNSQNGTNECNKRKRSENEAIKHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAAIAIKGKSAFLNFPKLSQELPKPASTSPKDIQAAAAKAATTIFEQASNKHCEVHDCAETELNQVVEQASSSTLSLDNSLESSTSPSTINDYDHDDDALFDLPDLFPDGNNGLFSYSSSWHLCTVYSGFKQDEQYLWENYSS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1877 262 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Lan11g1877 262 MobiDBLite consensus disorder prediction 1 62 - -
Lan11g1877 262 PANTHER ETHYLENE RESPONSE FACTOR 9 260 - -
Lan11g1877 262 CDD AP2 79 135 IPR001471 GO:0003700|GO:0006355
Lan11g1877 262 MobiDBLite consensus disorder prediction 63 77 - -
Lan11g1877 262 SUPERFAMILY DNA-binding domain 78 135 IPR016177 GO:0003677
Lan11g1877 262 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Lan11g1877 262 Gene3D AP2/ERF domain 78 136 IPR036955 GO:0003700|GO:0006355
Lan11g1877 262 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Lan11g1877 262 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Lan11g1877 262 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Lan11g1877 262 MobiDBLite consensus disorder prediction 1 77 - -
Lan11g1877 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1877 Lan-Chr11 35453802 35455093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1877 66 256 AP2-EREBP Transcription Factor Family AT2G44940 50.704 1.98e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan11g1877 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1877 - - gmx:100801129 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1877 11 35453802 35455093 Lan13g1015 13 14864356 14865241 LSH