Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1874 ATGGATGAGAAAAATGATGTGTTGGGGTTAAGTTTGAGATTGAGTTTTGGAGCATGTGGAATGGTGAATCTACCTCCTTCTATTTCAAAGGTGAATCACAACATGCACAAACATCTTCATGATTTGTCTAAGATTCCTGCAACGGATTGTGTCAACGACAACGGCGTTTCGTCGCCGAATAGCACATTGTCGAGCTTAAGTGTCTGCAAGCAAAGCGAGAGGGATGACAATGAGGCTGTCGTCAGGGCATCGTGCTCACAGGGCAGTGATGACGAGGATGGTGGTGGCGATGGTGATGGTACGAGGAAGAAGTTGAGACTCACAAAGGAACAAGCCTATGTGTTGGAAGAAACATTCAAGGAGCATAACACACTCAATCCGAAACAGAAGCAAACTTTGGCAATGGAGTTGAGTCTAAGGCCTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGAACAAGTTGAAGCAAACTGAGGTAGATTGTGAATCCTTGAAGAGATGTTCGAAGAATCTAACCGAAGAGAATAAAAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAATTATCCCCACATCTATACATGCATATGAACCCTCCCACCACTCTAACCATGTGCCCTTCATGTGAGCGTGTCGCGATCTCGTCAGCGTCGTCCTCCTCCTCAACCACTTCGCAATCGATTGTAGCATCGAGTAATCATAATCCATTGGACTTGACCCTCCGGTTAGGGGCCGGTGGTGCCTGTCAAACCTAG 768 0.4635 MDEKNDVLGLSLRLSFGACGMVNLPPSISKVNHNMHKHLHDLSKIPATDCVNDNGVSSPNSTLSSLSVCKQSERDDNEAVVRASCSQGSDDEDGGGDGDGTRKKLRLTKEQAYVLEETFKEHNTLNPKQKQTLAMELSLRPRQVEVWFQNRRARNKLKQTEVDCESLKRCSKNLTEENKRLQKEVQELRALKLSPHLYMHMNPPTTLTMCPSCERVAISSASSSSSTTSQSIVASSNHNPLDLTLRLGAGGACQT* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1874 255 Pfam Homeobox associated leucine zipper 158 192 IPR003106 GO:0006355|GO:0043565
Lan11g1874 255 SMART halz 158 201 IPR003106 GO:0006355|GO:0043565
Lan11g1874 255 SUPERFAMILY Homeodomain-like 86 159 IPR009057 -
Lan11g1874 255 CDD homeodomain 102 159 IPR001356 GO:0003677
Lan11g1874 255 PANTHER - 47 239 - -
Lan11g1874 255 Pfam Homeodomain 102 156 IPR001356 GO:0003677
Lan11g1874 255 SMART HOX_1 100 162 IPR001356 GO:0003677
Lan11g1874 255 Coils Coil 150 194 - -
Lan11g1874 255 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Lan11g1874 255 MobiDBLite consensus disorder prediction 84 103 - -
Lan11g1874 255 Pfam HD-ZIP protein N terminus 47 75 IPR006712 GO:0005634
Lan11g1874 255 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
Lan11g1874 255 Gene3D - 84 162 - -
Lan11g1874 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 47 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1874 Lan-Chr11 35392638 35396644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1874 29 215 Homeobox Transcription Factor Family AT3G60390 65.238 7.88e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan11g1874 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1874 K09338 - pop:18105041 254.218